Sphingopyxis sp. FD7: SPYCA_2863
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Entry
SPYCA_2863 CDS
T10393
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd03410
Base excision repair
spfd03430
Mismatch repair
spfd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SPYCA_2863
03430 Mismatch repair
SPYCA_2863
03440 Homologous recombination
SPYCA_2863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spfd03400
]
SPYCA_2863
DNA repair and recombination proteins [BR:
spfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SPYCA_2863
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SPYCA_2863
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPYCA_2863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF6986
Motif
Other DBs
NCBI-ProteinID:
BBB13605
UniProt:
A0A2Z5UR57
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All DBs
Position
2969348..2971114
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AA seq
588 aa
AA seq
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MSEAALGITRSIAGQPWRWRRASADMVGENLAPDDLVTQLLLARGVARDDLERQRTPTLR
GFMPDPSLFRDMDAAAARLADAVERHEAVTIFGDYDVDGATSAALLVRLLRALGLPVGAY
IPDRLMEGYGPSGAALVRIGEAGSKLVVTVDCGAQAFDAIAEANAAGVEVIVVDHHQCAT
ALPAALALVNPNRLDEAPEAAVHGNLAAVGVAFLLGAALLRTLRARGFFTSRDEPPLIDL
LDLVALGTVADVARLTGFNRALVTQGLKVMARRGNIGLAALMDAARLTKPPGASDMGFAL
GPRINAGGRVGKSDLGVRLLTTDDPQEAADIAQQLCRLNEERRAIEAAVLDEALAASAAC
GNAPVAVVAGEGWHPGVIGIVAGRLKERLHRPAVVIAVDEEGVGKGSGRSISGVDLGAAI
LAAKETGLLVAGGGHAMAAGLTVAAEQIDALGAFLNDRLAADVERASGERSLLIDAVLAP
RGISRLWCDAIESAGPYGAGWPAPRVATGPVRIVESGIVGADHVRLIVAGDDGARFKAVA
FRSAETVLGQTLLGARGRKLWLAGRAKRDDWGSRPAAELHLEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggcggcgctgggcatcacccgctcgatcgcgggccagccgtggcgctggcgg
cgcgcgagcgccgacatggtcggcgagaatctggcacccgacgaccttgtcacacagttg
ctgctcgcgcgcggggttgcgcgcgacgacctcgagcgccagcgcaccccgaccttgcgc
ggcttcatgcccgacccgtccttgttccgcgacatggacgccgccgccgcgcggctcgcc
gatgcggtcgaaaggcacgaggcggtgacgatcttcggcgattatgacgtcgacggcgcg
acatcggccgcgctgctcgtccgcctgctccgcgcgctcgggctgccggtcggcgcctat
atccccgaccgtctgatggaaggctatggcccgtcgggcgcggcgctggtcaggatcggc
gaagcggggtcgaagctggtcgtcaccgtcgattgcggcgcgcaggcgttcgacgcgatc
gccgaggccaatgcggcgggggtcgaggtgatcgtcgtcgaccatcaccagtgcgcgacc
gccctccccgccgcgctcgcgctggtgaaccccaatcggctcgacgaggcgccagaggcg
gcggtccacggcaatctggcggcggtcggcgtcgccttcctgctcggcgcggcgctgctc
cgcacgctgcgcgcgcgcggctttttcacaagccgcgacgaaccgccgctgatcgacctg
ctcgatctggtcgcattgggcaccgtcgccgatgtcgcgcggctcaccggcttcaaccgc
gcgctggtgacgcagggactgaaggtgatggcgcggcgcggcaatatcggcctcgctgcg
ctgatggacgcggcaaggctcaccaagccgccgggcgcaagcgacatgggctttgctctc
ggcccgcggatcaacgcgggcgggcgcgtcggcaagtcggaccttggcgtccgcctgctg
accaccgacgacccgcaggaagccgccgacatcgcgcagcaattgtgccgcctcaacgag
gagcgccgcgcgatcgaagcagccgtgctcgacgaggcgctggcggcgagtgctgcgtgc
ggcaatgcgcccgtggcggtcgttgccggtgaaggctggcaccccggcgtgatcggcatc
gtcgccgggcggctgaaggaacggctgcaccgtcccgcggtcgtcatcgcggtcgacgag
gagggcgtcggaaagggatcgggccgctcgatcagcggggtcgatctgggcgcggcgatc
ctcgctgccaaggagacgggactgctcgtcgcgggcggcggtcatgcgatggcggcgggg
cttaccgtcgcggcggagcagatcgacgcgctcggcgctttcctgaacgaccggctcgcg
gcggacgtcgagcgcgcgagcggcgagcggtcgttgctgatcgacgccgtgctggcgccg
cgcggcatttcgcggctgtggtgcgacgcgatcgagagcgcgggcccctatggcgccggc
tggcccgcgccgcgcgtcgcgaccgggccggtacgaatcgtcgaatcggggatcgtcggc
gccgatcacgtccggctgatcgtcgcgggcgacgacggcgcgcggttcaaggcggtcgcc
tttcgcagcgccgaaacggtgctggggcagacattgctcggcgcgcgcggacgcaagctg
tggctcgcgggccgggcgaaacgcgacgattggggcagccgccccgccgccgagctgcac
ctggaggatgccgcctgggccgactga
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