Sphingopyxis sp. FD7: SPYCA_3021
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Entry
SPYCA_3021 CDS
T10393
Name
(GenBank) sigma-54 dependent trancsriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd02020
Two-component system
spfd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SPYCA_3021
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
SPYCA_3021
02025 Biofilm formation - Pseudomonas aeruginosa
SPYCA_3021
09142 Cell motility
02040 Flagellar assembly
SPYCA_3021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spfd03000
]
SPYCA_3021
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
spfd02035
]
SPYCA_3021
Transcription factors [BR:
spfd03000
]
Prokaryotic type
Helix-turn-helix
Other families
SPYCA_3021
Bacterial motility proteins [BR:
spfd02035
]
Flagellar system
Flagellar assembly proteins
Others
SPYCA_3021
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
Mg_chelatase
AAA_16
AAA
IstB_IS21
AAA_7
EHN
Motif
Other DBs
NCBI-ProteinID:
BBB13763
LinkDB
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Position
complement(3103403..3104470)
Genome browser
AA seq
355 aa
AA seq
DB search
MTVGHKEQVALEASIIGTSEGAARLREMIRRVARSNASVMLCGPSGSGKELVARAIHDES
VRAGNAFSAINCGAIPGELIESELFGHEKGSFTGAHARRIGHFEASEGGTIFLDEIGDMR
FDMQVKLLRVLEDRTIVRVGSSEVKPVDVRVISATHQDLGAAIAEGKFREDLFFRLGVVV
LQVPSLASRAEDIPALIRHFQRKMPADAKCRFDAGAMTMLMQHGWPGNVRELRNFVERAS
VLHGGETLDAQDVAMLLNPTAAPAPRPAVPGSPAAVPVRPNDRSAPLPAAAVAKTPAPGR
PIDLKREIETIELEQIHVALDLADGIISEAARLLTLKRTTLIEKMRKYGVHQQAA
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtggggcacaaggaacaagtggcgctcgaagcctcgatcatcgggacgagcgaa
ggcgcggcgcggctgcgcgaaatgatccgccgcgtggcgcggtcgaacgcgtcggtcatg
ctttgtggtccctcggggtcgggcaaggagctggtggcgcgtgcgatccacgacgaaagc
gtccgtgcgggcaacgccttttcggcgatcaattgcggcgcgattcccggcgagcttatc
gaatctgaactgttcgggcatgaaaagggcagcttcaccggcgcccatgcccgccgcatc
ggccatttcgaggccagcgaaggcggcaccatcttcctcgacgaaatcggcgacatgcgc
ttcgacatgcaggtcaaactgctgcgcgtgctggaagaccggacaatcgttcgcgtcggg
tcgagcgaggtgaagcccgtcgacgtgcgcgtcatttcggcgacgcaccaggatctcggc
gccgcgatcgccgagggcaagttccgcgaagacctgttcttccggctcggcgtggttgtg
ctccaggtccccagcctggcgagccgcgccgaggatattccagcgcttattcgccatttt
cagcgcaagatgcccgccgatgccaaatgccgcttcgacgccggtgcgatgacgatgctg
atgcagcacggctggcccggcaatgtgcgcgaactcagaaacttcgtcgaacgcgccagc
gtcctccacggcggcgagacgctcgatgcgcaggacgtcgcgatgctcctgaaccccacc
gcagcgccggcgccgcggcccgctgtccccggcagccccgccgcggtgccggtccgcccg
aacgatcgctcggctccgctgcctgcggcggctgtggccaagacgccggcgccgggccga
ccgatcgacctcaagcgcgagatcgagacgatcgaactcgaacagatccacgtcgcgctc
gacctcgccgacggcataatttcggaagcggcgcgcctcttgacgctgaagcgcacgacg
ctgatcgaaaagatgcgcaaatatggggttcatcaacaggccgcctga
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