Sphingopyxis sp. FD7: SPYCA_3576
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Entry
SPYCA_3576 CDS
T10393
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SPYCA_3576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spfd03400
]
SPYCA_3576
Enzymes [BR:
spfd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SPYCA_3576
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SPYCA_3576
DNA repair and recombination proteins [BR:
spfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SPYCA_3576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Desulfoferrod_N
Motif
Other DBs
NCBI-ProteinID:
BBB14318
UniProt:
A0A2Z5US60
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All DBs
Position
3694038..3694859
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AA seq
273 aa
AA seq
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MRDMPELPEVETTVRGLAPFLEGQRLAAVTTFRPDLRRPFPADLAQRLTGATVTALSRRA
KYGIVSTDRDDHMIFHLGMSGRWRTEGGEPGRHDHLLLETAAGHRLFLHDPRRFGSVDLV
AGDPLAAFAAFVMLGPEPLSDAFDAAHLVRAFAGRRAPVKAMLLDQTIVAGLGNIYVCEA
LNMARISPLKPAADVPKARIGALVPAIKTVLAAAIAAGGSTLRDFLSPEGDLGYFAKDWR
VYGREGDRCECGGAIVRVVQSGRSTFYCRKCQR
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatatgcccgaacttcctgaagtcgaaaccaccgtgcgcggcctcgcgcccttt
ctcgaggggcaaaggctggcggccgtcaccacctttcgccccgacctgcgccgccccttt
cccgccgacctcgcgcagcgcctcaccggcgccaccgtgaccgctctgtcgcgccgcgcc
aaatatggcatcgtttcgaccgaccgcgacgatcatatgatctttcacctcggcatgtcg
gggcgctggcggaccgaggggggcgagccgggcaggcacgaccatctgcttctcgaaacc
gcggcggggcaccggctctttctccacgacccgcggcgcttcggctcggtcgatctggtc
gcgggcgatccgctggcggcgttcgcggcgttcgtgatgctcggccccgaaccgctgtcg
gacgcgttcgacgccgcccatctggtgcgcgccttcgcggggcgacgcgcgcccgtgaag
gcgatgctgctcgaccagactatcgtcgcggggctcggcaacatctatgtttgcgaggcg
ctcaacatggcgcgcatctcgccgctgaagcccgccgccgacgtgcctaaagccagaatc
ggcgcgctcgtgcccgcgatcaagacggtgctcgccgccgcgatcgccgcgggcggttcg
acgctgcgcgattttttgagccccgagggcgaccttggctatttcgcaaaggattggcgc
gtctatggccgcgagggcgatcgttgcgaatgcggcggcgcgatcgtgcgcgtcgtgcag
tcggggcgctcgaccttttactgccgcaaatgccagcgttga
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