Sphingomonas sp. gentR: V3I01_00350
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Entry
V3I01_00350 CDS
T11876
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spge Sphingomonas sp. gentR
Pathway
spge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V3I01_00350 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spge03019
]
V3I01_00350 (pnp)
03016 Transfer RNA biogenesis [BR:
spge03016
]
V3I01_00350 (pnp)
Enzymes [BR:
spge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
V3I01_00350 (pnp)
Messenger RNA biogenesis [BR:
spge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V3I01_00350 (pnp)
Transfer RNA biogenesis [BR:
spge03016
]
Prokaryotic type
tRNA degradation factors
V3I01_00350 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_TP0910
Motif
Other DBs
NCBI-ProteinID:
WVW39808
LinkDB
All DBs
Position
79946..82285
Genome browser
AA seq
779 aa
AA seq
DB search
MFNTKKVAIEWGGKTLTLETGKVARQADGAVIATLGETVVLCAVTAAKNVKEGQDFFPLT
VHYQEKFSSAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNEINCICQVLSY
DGENEPDILALVAASAALTISGVPFMGPIGAARVGYVDGEYQLNPTDAEALAGDLDLVVA
ATHDAVMMVESEAKELSEEVMLGAVMFAHKASQQIIDAIIDLAEQAAKDPWELKVGDDQK
AVKAELKKLVGKDITAAYKLTDKQQRQTALGEARAKAKAAMADRSPQEQLVAAKLVKKLE
AEIVRTAILKDGRRIDGRSTTQIRPIEAEVHFLPRSHGSALFTRGETQTIATTTLGTRDA
EQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKEEF
PYTIRVTSDITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDFAVLSDI
LGDEDHLGDMDFKVAGTSEGITSLQMDIKIAGITEEIMKVALAQAKEGRAHILGEMNKAL
GETRTELSAHAPRIETMTIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGVIKISSSD
GSQIEAAMNWIKGIVEEAEVGKIYNGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEK
VSDVLTEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAELEDNRPAREPREPRGDRGPREG
GRGPRRDGGDRGGERGGDRGGEGRSGPRRDRGDRPRREGGEQGGSPEFAAPAFLTGDRD
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataccaagaaagtggccatcgagtggggcggcaagacgctgaccctcgaaacc
ggcaaggtggcccgtcaggccgacggcgcggtgatcgcgacgctgggcgagacggtggtg
ctgtgcgccgtgacggccgcgaagaatgtgaaggaagggcaggacttcttcccgctcacc
gttcactatcaggaaaagttctcgtcggcgggccgtatccccggcggtttcttcaagcgc
gagcgcggcgcgaccgagcgtgagacgctgatcagccgcctgatcgatcgtccgatccgc
ccgctgttccccgagggtttctacaacgagatcaactgcatctgccaagtgctctcctat
gatggcgagaacgagcccgacatcctggcgctggtcgccgcgtcggccgcgctcaccatc
tcgggcgtgcccttcatgggcccgatcggcgcggcgcgcgtcggttatgtcgatggcgag
tatcagctgaacccgaccgacgccgaggcgctggccggtgacctggacctggtcgtcgcc
gccacccatgacgcggtgatgatggtcgagtcggaagccaaggagctgtccgaggaagtg
atgctgggcgccgtcatgttcgcgcacaaggcatcgcagcagatcatcgacgcgatcatc
gacctggccgagcaggccgcgaaggacccgtgggagctgaaggtcggcgacgaccagaag
gcggtcaaggccgagctgaagaagctggtcggcaaggacatcacggcggcctacaagctg
accgacaagcagcagcgccagaccgcgctgggcgaggcgcgcgccaaggcgaaggccgcc
atggcggaccgtagcccacaggagcagctggtcgccgccaagctggtcaagaagctggaa
gccgagatcgtccgcaccgcgatcctgaaggacggccgccgcatcgacggtcgctcgacc
acccagatccgtccgatcgaggcggaagttcacttcctgccgcgttcgcacggctcggcg
ctgttcacgcgcggcgagactcagacgatcgcgaccacgacgctgggcacccgcgacgcg
gagcagatgatcgacggtctgaacggcctgtcctaccagcacttcatgctgcactataac
ttcccgccctattcggtcggcgaagtgggccgcttcggcgcgccgggtcgtcgcgagatc
ggccatggcaagctggcgtggcgtgccctgcaccccgtgctgccgtcgaaggaggaattc
ccctacaccatccgcgtgaccagcgacatcaccgagtcgaacggctcgtcgtcgatggcc
accgtgtgcggcggctcgctgtcgctgatggatgcgggcgttccgctgaagcgtccggtc
tcgggcatcgccatgggcctgatcctggaaggcaaggacttcgccgtcctgtcggacatc
ctgggtgacgaggatcacctgggcgacatggacttcaaggtcgccggcacctccgagggc
atcacctcgctccagatggacatcaagatcgccggtatcaccgaggagatcatgaaggtc
gcgctggcgcaggccaaggaaggccgtgcgcacattctgggcgagatgaacaaggcgctg
ggcgagacccgcaccgagctgtcggcccatgccccgcgcatcgagacgatgacgatcgac
aagtcgaagatccgcgacgtgatcggcaccggcggcaaggtgatccgcgagatcgtcgcc
accaccggcgccaaggtcgacatcgacgacgagggcgtgatcaagatcagctcgtctgat
ggttcgcagatcgaagccgcgatgaactggatcaagggcatcgtcgaagaggccgaggtc
ggcaagatctataacggcaaggtcgtcaacctggtcgatttcggcgcgttcgtgaacttc
atgggcggcaaggacggtctggtccacgtctcggagatcaagaacgagcgcgtcgagaag
gtttcggacgtcctgaccgaaggccaggaagtcaaggtcaaggtcctcgagatcgatccg
cgcggcaaggtccgcctgtcgatgcgcgtcgtcgaccaggaaaccggcgccgagctggag
gacaaccgtccggcccgcgaaccgcgtgaaccgcgcggcgatcgtggtccccgtgaaggc
ggtcgcggtccgcgccgcgatggtggtgaccgtggcggcgagcgtggtggtgatcgtggc
ggcgaaggccgcagcggcccgcgtcgcgaccgtggcgaccgtccccgtcgcgaaggtggc
gagcagggcggttcgcccgaattcgccgctccggccttcctgaccggcgatcgcgactga
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integrated database retrieval system
