Streptococcus pyogenes MGAS10270 (serotype M2): MGAS10270_Spy0006
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Entry
MGAS10270_Spy0006 CDS
T00355
Symbol
trcF
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sph
Streptococcus pyogenes MGAS10270 (serotype M2)
Pathway
sph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MGAS10270_Spy0006 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sph03400
]
MGAS10270_Spy0006 (trcF)
Enzymes [BR:
sph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MGAS10270_Spy0006 (trcF)
DNA repair and recombination proteins [BR:
sph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MGAS10270_Spy0006 (trcF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
AAA_16
adh_short
RecG_dom3_C
DmsC
Motif
Other DBs
NCBI-ProteinID:
ABF33071
LinkDB
All DBs
Position
5206..8709
Genome browser
AA seq
1167 aa
AA seq
DB search
MDILELFSQNKKVQSWHSGLTTLGRQLVMGLSGSSKTLAIASAYLDDQKKIVVVTSTQNE
VEKLASDLSSLLDEELVFQFFADDVAAAEFIFASMDKALSRIETLQFLRNPKSQGVLIVS
LSGLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDIL
DIYEITQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEVSDFQRGIE
QLEKALQTAQDDKKSYLEDVLAVSKNGFKHKDIRKFQSLFYEKEWSLLDYIPKGTPIFFD
DFQKLVDKNARFDLEIANLLTEDLQQGKALSNLNYFTDNYRELRHYKPATFFSNFHKGLG
NIKFDQMHQLTQYAMQEFFNQFPLLIDEIKRYQKNQTTVIVQVESQYDYERLEKSFQDYQ
FRLPLVSANQIVSRESQIVIGAISSGFYFADEKLALITEHEIYHKKIKRRARRSNISNAE
RLKDYNELAVGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSDRISLPIDQIGSL
SKYVSADGKEPKVNKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFSFSPDDDL
QRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAVLVPTTVLAQQHYKNFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIG
THRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGGQIFYVYNKVDTIEKKVAEL
QELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQLLEQAIASKQGKTTVRQKGNTEINLQIDAYLP
DDYIADERQKIDIYKRIREIQSREDYLNLQDELMDRFGEYPDQVAYLLEIALLKHYMDNA
FAELVERKNNQVIVRFEVTSLTYFLTQDYFEALSKTHLKAKISEHQGKIDIVFDVRHQKD
YRILEELMLFGERLSEIKIRKNNSVFK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggatattttagaattatttagtcagaataagaaagtccaatcctggcactctggatta
accaccttaggaagacaactggtaatggggttatcgggttcaagtaaaacattggctata
gcttccgcttatttagatgatcaaaaaaaaatagttgtggttacatcaactcaaaatgag
gttgaaaaattagccagcgatttatctagtttacttgatgaagaacttgttttccaattt
tttgcagacgatgtggctgcagcggaatttatctttgcgtcaatggataaagctctatca
agaatagaaaccctgcaatttttaaggaatcctaaatctcagggcgttttaattgttagt
ttatcaggcttaagaactttattgccaaacccagatgtttttacaaagagtcagattcaa
ctaacagttggagaagattatgatagtgatactcttactaaacaactgatgacaattggc
tatcagaaggtctcacaggttattagtccaggagaatttagccgtcgaggggatatttta
gatatctatgagattacacaagaattgccttatcgattggaattttttggcgatgatatt
gatagtattaggcaatttcatccagaaactcaaaaatcttttgaacaactagaaggtatt
tttattaatccagcaagtgatcttatttttgaggttagtgattttcaacgtggcattgag
caattagaaaaggctctacaaacagcacaggatgataaaaaatcttatttagaagatgta
ttagctgtttcaaaaaacggttttaaacataaggatatccgtaaatttcaatcattattt
tatgaaaaagagtggtcattattagattatattcctaagggaacgccaatcttttttgat
gattttcaaaaactagttgataaaaatgcaagatttgatttagagattgctaatctcttg
acagaagatttacagcaaggaaaggctctttccaatcttaactactttacagataattat
cgagagcttaggcactataagccagcgaccttcttttcaaattttcataagggacttgga
aatatcaaatttgatcagatgcatcagctaactcagtatgccatgcaggaattttttaat
caatttcctttgttgattgatgagattaaacggtatcaaaaaaatcaaacaacggttatt
gtacaggtagagtctcagtatgattacgaacgacttgaaaaatcttttcaagattaccaa
tttcgccttcctttagtgagtgctaatcaaattgtttcacgtgaatcacaaattgtaatt
ggagctatctccagtggtttttattttgctgatgaaaagttagcgttgatcacagagcat
gaaatttatcataaaaagatcaaacgacgcgctagacgatctaatattagcaatgctgag
cgtttgaaagattacaatgagttagcagtaggtgattacgtggttcataatgtccatggt
atcggtcgctttcttggaattgaaacgattcagattcagggaatccatcgagattacgtt
actattcaatatcaaaattcagaccgtatttctcttccaattgaccaaattggtagctta
tcaaaatacgtttctgctgatggaaaagaacccaaagtcaacaaactgaatgacggtcgt
tttcaaaagacaaagcaaaaggtcgctagacaagtagaggatattgctgatgaccttcta
aaattatatgctgaaagaagtcagcaaaaaggattttcattttcaccagatgatgacttg
cagcgcgcttttgatgatgattttgcttttgtagaaacagaagatcaacttaggtctata
aaggaaattaaagctgatatggagagcatgcaacctatggatcgtcttttagtaggcgat
gtaggatttggtaagacagaagtagctatgagagcagcctttaaagcggtgaatgatcac
aaacaagtagctgtcttagttccaaccacagtcttggcccagcagcattataaaaacttc
aaagcacgctttgaaaattaccctgttgaggttgacgtcttaagtcgtttccgtagtaaa
aaagagcaagctgaaacactagaacgtgtacgaaaaggtcaaattgacattattatcgga
acccatcgactcctatcaaaagatgtggtcttttctgatttaggattgattgtgattgat
gaggaacaacggtttggtgttaagcataaagaaactttaaaggaattaaaaactaaggtt
gacgtcttaaccttaacagctactccgattcctagaaccttacacatgtctatgttaggt
atccgagatttatcggttattgagaccccaccaaccaatcgttatcctgttcaaacctat
gttttggaaaataatccaggtctcgttagagaagctatcattcgtgaaatggatcgcgga
ggacaaattttttacgtttacaataaagttgacactattgaaaagaaagttgcagagcta
caagaattagtcccagaagcttctataggttttgttcatgggcaaatgagtgaaattcaa
cttgaaaataccttgattgactttataaatggtgattatgatgtccttgtggcaacaaca
atcatcgaaacaggagttgacatttctaatgtaaacactttgtttattgagaatgctgat
catatgggattgtcaactttatatcaactacgagggcgcgtcggaagaagtaatcgtatt
gcttatgcttacctgatgtatcgtcctgataaggtcctaacagaagtctctgaaaagcgt
ttagaggctattaaaggctttactgaattaggttcaggcttcaagattgctatgcgagat
ttgtctatacgaggagcaggtaatattttaggagcttctcaaagtggctttattgattcg
gtcggttttgaaatgtattctcagttattggaacaggctattgctagcaagcaaggaaaa
acgactgttcgccaaaaaggtaatactgaaatcaatcttcagattgatgcctatttacca
gatgattatattgcagatgagcgccaaaaaattgacatttacaagcgtattcgagaaatt
caatcaagagaagattatctcaatttgcaagatgagcttatggatcgttttggagagtat
cctgatcaagttgcctatttgttagagatagctctgctaaaacattatatggacaatgcc
tttgcggaattagttgaacgcaaaaataatcaggtcattgttcgatttgaagtaacttct
ttaacttatttcttgactcaggattatttcgaagccttatcgaaaacccatcttaaagct
aaaattagtgaacatcaggggaaaatcgatatcgtctttgacgttcgccatcaaaaagat
tatagaattttagaagaattgatgttatttggagaaaggcttagtgagataaaaatcaga
aaaaacaattcagtttttaaataa
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