Sphingomonas paeninsulae: D3Y57_08730
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Entry
D3Y57_08730 CDS
T05706
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spha
Sphingomonas paeninsulae
Brite
KEGG Orthology (KO) [BR:
spha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spha03032
]
D3Y57_08730
03400 DNA repair and recombination proteins [BR:
spha03400
]
D3Y57_08730
Enzymes [BR:
spha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D3Y57_08730
DNA replication proteins [BR:
spha03032
]
Prokaryotic type
DNA Topoisomerases
D3Y57_08730
DNA repair and recombination proteins [BR:
spha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D3Y57_08730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF7531
Motif
Other DBs
NCBI-ProteinID:
AYJ87855
UniProt:
A0A494TRY3
LinkDB
All DBs
Position
692079..693023
Genome browser
AA seq
314 aa
AA seq
DB search
MRHGWGYWDAKGVRITDRDEIDRLNKVALPPAYRDAWFCPSPEGHIQAIGYDARGRKQYR
YHTGFRAAQDAAKYDKCSAFGRALPLLRARVERDLAGKATDRDTVIAAVVRLLDIGHLRV
GNEAYAQSNKSFGATTLRNRHVKVAGQRLNLQYRAKSGVMRKLTITDRGLSRVVRRVQDL
PGQQLFQYRDDAGEIHSVGSAEVNAYIRDAMGDDFTAKHFRTWSASVIALEHVEIAASSG
IKIKLAELLEPVAAALGNTPTIARKSYVHPYVLERASTSSEALVLPRKTRWLSPAERALI
ELLDAGAKAVSKAA
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgcggcacggctggggatattgggatgcgaagggcgtgcggatcaccgaccgcgatgag
atcgaccggctgaacaaggtcgcgctgccgcccgcctatcgcgacgcatggttttgccca
tcgccggaggggcatattcaagcgatcggttatgacgcgcggggtcgcaaacaatatcgc
tatcacaccgggtttcgcgcggcgcaggatgccgcgaaatacgacaaatgttcggcattc
ggacgggcgctgccgctgctgcgtgctcgcgtagagcgcgatctggcgggcaaggcgacc
gaccgtgacaccgtgattgccgccgtggtccggttgctcgacatcggccatctgcgcgtc
ggtaacgaagcctatgcgcaatcgaacaagagctttggcgcgacgacgctgcgcaatcgg
cacgtcaaggtcgccgggcaaaggctgaacctgcaatatcgtgcgaagtcgggcgttatg
cgcaaactgacaatcaccgaccgggggctgagccgcgtggtgcgccgcgtgcaggatctg
ccgggccagcaactgttccagtatcgcgatgacgccggcgaaattcacagcgtcggttcg
gcggaggtcaacgcctatatccgcgacgcaatgggtgacgatttcaccgccaaacatttc
cggacttggagtgccagcgtaatcgcactcgaacacgtagagatcgccgcgtcgtcgggg
ataaagatcaaactggccgagcttttggaaccggttgcggcggcgctggggaatacgcca
accattgcgcgcaaatcctatgtgcatccttatgttttagaacgtgcgtcgacatcatcc
gaggcgctggtgctgcctcgaaagacccgctggctctcgccggccgagcgcgcgctcatc
gagttgcttgacgccggggcgaaggcggtatccaaggcggcctga
DBGET
integrated database retrieval system
