Sphingomonas paeninsulae: D3Y57_10975
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Entry
D3Y57_10975 CDS
T05706
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
spha
Sphingomonas paeninsulae
Brite
KEGG Orthology (KO) [BR:
spha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spha03032
]
D3Y57_10975 (gyrB)
03400 DNA repair and recombination proteins [BR:
spha03400
]
D3Y57_10975 (gyrB)
Enzymes [BR:
spha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
D3Y57_10975 (gyrB)
DNA replication proteins [BR:
spha03032
]
Prokaryotic type
DNA Topoisomerases
D3Y57_10975 (gyrB)
DNA repair and recombination proteins [BR:
spha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D3Y57_10975 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
AYJ86390
UniProt:
A0A494TBA3
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All DBs
Position
1109344..1111896
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AA seq
850 aa
AA seq
DB search
MTDTPTDALPENVPNANEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDN
AIDEALAGHCDRIEITLNPDGSVTVEDNGRGIPTGIHAEEGVSAAEVIMTQLHAGGKFEN
TSNDNAYKVSGGLHGVGVSVVNALSEFLDLTIWRDGQEHFMRFAFGDAVAPLKLVGPAPV
GKKGTKVTFLPSPATFKIVEFDFDKLEHRFRELAFLNSGVRLFLIDARHEERKEVELYYE
GGIAAFVKYLDRAKSPLFPEPISVTGQRDDVSIEVALEWNDSYYENVLPFTNNIPQRDGG
THLAAFRAALTRTLNNYAEKSGMLKKEKVTLTGDDMREGLTAIVSVKLPDPKFSSQTKDK
LVSSEVRQPLESLMADKMAEWLEENPAHAKSIIQKTIDAAAAREAAKKARELTRRKGVMD
IASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRHYQAILPLRGKILNVERARFD
RMLSSREIGTLIQAMGTGIGRDDFNLAKLRYHKIVIMTDADVDGSHIRTLLLTFFYRQMP
DIINAGHLYIAQPPLYKAARGRSEVYLKDDAALDDYLVEAGVAGTRLESAGGARAGEDLK
MLVDHARRMRALMKYVPRRYDPAIIEAFALMGALDPNLATEGRQEAANRSAQWLNRADPE
AKWSARIAAEGGYHLERLWRGVTDHHIIESAFLISQEARRLHTLVAEQAESYASIARLVT
IAKAPAPSTVEIVVPKTGVADGDDADVEVEDTAPINAKGIHITRPSDLLDAILTAGRKGL
SIQRYKGLGEMNAEQLWETTLDPQNRAMLRVEISQADMADEIFTRLMGDVVEPRREFIQE
NALNVANLDV
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgacagatacaccgactgatgccctccccgaaaacgtccccaatgccaatgaatatggc
gcagattccatcaaggttctcaaggggttggacgccgttcgcaagcgccccggaatgtac
atcggcgataccgatgacgggtcgggcctgcaccacatggtgttcgaagtttcggacaac
gccatcgacgaagcactggccggacattgcgaccggatagagatcacgctgaacccagac
ggctcggtcacggtcgaggataacggccgcggcatcccgaccggcattcatgccgaggag
ggcgtttcggcagccgaagtcatcatgacccagcttcacgccgggggtaagttcgagaac
acgtcaaacgacaacgcttacaaggtttcaggcggcctgcacggcgtcggcgtctcggtc
gtcaacgcactcagcgaatttctcgacctgacgatctggcgtgacgggcaagaacatttc
atgcgctttgcctttggcgatgccgtggctccgctgaaactggtcggccccgcgccggtc
ggcaaaaagggtacgaaagtcaccttcctgccgtcgcccgcgacgttcaagatcgtcgaa
ttcgatttcgacaagctcgagcaccgcttccgcgagctggcgtttctgaactcgggcgtg
cgcctgttcctaatcgatgcgcgtcacgaagagcgcaaggaagtcgaactttactacgag
ggcggaattgccgcgttcgtgaaatatctcgaccgcgcaaagtcgccattgttccccgaa
ccgatctcggtcaccggccagcgcgacgatgtcagcatcgaggtcgcgcttgagtggaac
gattcatattatgaaaacgtgctgccgttcacgaacaacattccgcagcgcgacggcggc
acccatctggccgcattccgcgccgcgttgacgcgcacgctcaacaactatgccgagaaa
tcgggaatgttgaaaaaggaaaaagttacgctgaccggcgacgatatgcgcgaaggtttg
accgcgatcgtttccgtcaaactccccgatccgaaattcagcagtcagaccaaggataag
ctggtttcatccgaagtccgccagcctttggaaagcctgatggccgacaagatggccgaa
tggctcgaggaaaaccccgctcacgcaaagagcatcatccagaagactatcgacgccgct
gctgcgcgcgaggcggccaaaaaggcgcgcgaactgacccggcgcaagggcgtaatggac
attgccagcctgcctggcaaactcgccgattgtcaggaacgcgaccccgcgaagtccgaa
ctgttcctggtcgaaggagactccgcaggcggctcagccaaacagggccgcgaccgccat
tatcaagcaatccttcccctgcgcggtaagatcctgaacgtcgaacgtgcgcgtttcgac
cgaatgctgtcgtcgcgggaaatcggcacgctgatccaggcgatgggcaccggcatcggg
cgggacgacttcaacctcgccaagcttcgctatcacaagatcgtcatcatgaccgacgca
gacgtcgacggctcgcacatccgcacgctgttgctgacgttcttctatcgccagatgccc
gacatcatcaacgccgggcacctctacatcgcccaacccccgctttataaagcggcgcgc
ggacgcagcgaagtctatctcaaggacgatgccgcgctcgacgattatctggtcgaagca
ggcgttgccggaacccgccttgaaagcgctggcggcgctcgtgcgggtgaagatctgaag
atgctggtcgatcatgcccgccggatgcgcgcgttgatgaagtacgtcccacggcgttac
gaccctgccatcatcgaggcatttgccctgatgggtgcactcgatccgaatctcgccaca
gaggggcgtcaggaggccgcaaaccgttcggcacaatggctgaaccgcgccgatcccgaa
gccaaatggagcgcgcgtattgcggcagagggaggctatcacctcgagcgcttgtggcgc
ggcgtgaccgatcaccacatcattgaatccgcgttcctgatctcgcaggaagcccgccgc
ctccacacactggttgccgaacaggccgaaagctatgcatcaatcgcgcgactggtgacg
atagcgaaagcgccggcaccatcgaccgttgagatcgtggttccgaaaacaggcgttgca
gatggcgacgatgcggacgtcgaagtcgaagacaccgctccgatcaatgcaaagggcatt
catatcacgcgcccgtccgacttgctcgacgcaatcctgaccgcagggcgcaaaggcctg
tcgatccagcgttacaagggtcttggcgaaatgaacgccgaacaattgtgggaaaccact
ctcgacccacagaatcgcgcgatgctccgggtcgaaatttcgcaagccgacatggccgac
gagattttcacgcgattgatgggcgatgtcgtcgaaccacgccgcgagttcattcaggaa
aatgcgcttaacgtggcgaatctggacgtctga
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