Sphingomonas paeninsulae: D3Y57_11780
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Entry
D3Y57_11780 CDS
T05706
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spha
Sphingomonas paeninsulae
Pathway
spha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3Y57_11780 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spha03019
]
D3Y57_11780 (recQ)
03400 DNA repair and recombination proteins [BR:
spha03400
]
D3Y57_11780 (recQ)
Enzymes [BR:
spha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3Y57_11780 (recQ)
Messenger RNA biogenesis [BR:
spha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3Y57_11780 (recQ)
DNA repair and recombination proteins [BR:
spha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D3Y57_11780 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AYJ86526
UniProt:
A0A494TL29
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All DBs
Position
1268543..1270306
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AA seq
587 aa
AA seq
DB search
MADLLDTLKTTFGFSAFRGVQHQVIDRVMAGQRTAAIMPTGAGKSLCYQLPAVMLPGTCV
VISPLIALMHDQLRAAEAVGIKAATLTSVDTNQAETIARFKSGDLNLLYAAPERASGDGF
RDLLSQGKLSLFAIDEAHCVSEWGHDFRPDYRLLRPLFDRFSSVPRLALTATADEHTRAD
ILTQLGISEDGLIVAGFDRPNIRYNIAPRAGTTRQISDFVAETPGAGIIYAQTRAQTEKL
AAQLALNGRPTRAYHAGLEASVRAANQAAFVKSEDMVMVATIAFGMGIDKPDVRFVAHAG
LPKSIEAYYQETGRAGRDGDPAAAQLFWGADDFARARIRLSEIPEDRIAGERTRLSALAN
LVETGTCRRAVLLRHFGESPPDNCGNCDNCLNPPARTNLTELARKLLSAVYRTGQMFGVG
HIEAVLTGQSNEKVLKLGHDRLSVFGIVTGDEAEMVKPVARALLLRDALGQTEHGGLELG
PEARAILKGEAEFAIAIPPRREGKRRRSNDQPANPVGDPLFEALRGRRRELAAEAQMPPY
VIFHDSTLREMATVRPTTLGELGRLGGVGTRKLEAYGEAFLAVIKSN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggccgacctgctcgacacactcaaaacgacattcggcttctccgccttcaggggtgtt
cagcatcaagtgatcgaccgcgtcatggcgggccagcgaactgcggcgatcatgccgacc
ggcgcgggcaagtcgctgtgttatcagttgccagcggtgatgttgcccggcacctgcgtc
gttatctcgccgctgatcgcgctgatgcacgatcaactgcgcgcggcggaggcagtgggc
atcaaggccgccacgctgacttcggtcgataccaaccaggccgaaactattgcgcgtttc
aaaagcggcgatctcaaccttctctatgcggcccccgaacgtgcatcgggagacggcttt
cgcgacctgctctcacagggaaaactatccctgtttgccatcgatgaagcccattgcgtt
tccgaatggggacatgattttcgtcccgactatcgcctgttgcggccattgttcgatcgc
ttttcctccgtcccccgccttgcgctgacggctactgccgacgaacacacccgcgccgat
atattaacgcaactgggtatttccgaggatggcctgatcgttgccgggttcgaccgcccc
aatatccgatacaacatagccccacgcgccgggacaactcgtcagataagcgactttgtt
gccgaaacacccggcgcggggattatttatgcccaaacgcgggcgcagaccgagaaactc
gccgctcaattggctttgaacggccgcccgacgcgagcgtaccacgcggggcttgaggca
tcggtgcgcgctgccaatcaggcagcgttcgttaagtccgaagacatggtgatggttgca
acgattgcgttcggcatggggatcgacaaacccgacgtccggttcgtcgctcatgccggg
ctgccgaaatcgatcgaggcctattatcaggaaaccgggcgcgcgggtcgcgatggagat
ccagcggcagcgcaacttttttggggcgctgacgattttgcgcgcgcgcggatacggttg
agtgaaatccccgaagatcgcatcgccggggaacggacaaggctctcggcgctggccaat
ctggttgaaaccgggacatgtcgccgtgccgtcctgctccgccattttggagaaagcccg
ccggataactgcggaaactgcgacaattgcctaaatcccccagcccgcaccaacctgacc
gagctcgcgcgtaaattgctgtcggcggtttatcgcaccgggcagatgtttggagtcggc
catatcgaagctgtgctgacaggtcagtcgaacgagaaggttctgaaactcggccacgac
cggctcagcgtcttcggcatcgtgaccggcgacgaagccgaaatggtaaagcccgttgcc
cgcgcacttctgcttcgagacgcgctcggccagaccgaacatggcgggctcgaacttggt
cccgaagcgcgtgccattctgaaaggcgaagcagaattcgcgattgcgatcccgccgcgc
cgcgagggcaagcgtcggcgcagcaacgaccagcccgccaatccggtcggcgaccccctg
tttgaagccttacggggccgccgccgcgaacttgccgcagaggcacagatgccgccctat
gtgatctttcacgattcgacgctgcgcgagatggcaacagtccgccccaccacattaggt
gagctaggtcgcctcggtggagttggaacgcgcaagctggaggcctatggcgaggcgttt
ctagccgtaatcaaatccaactga
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