Sphingomonas paeninsulae: D3Y57_12800
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Entry
D3Y57_12800 CDS
T05706
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spha
Sphingomonas paeninsulae
Pathway
spha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3Y57_12800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spha03019
]
D3Y57_12800
03009 Ribosome biogenesis [BR:
spha03009
]
D3Y57_12800
Enzymes [BR:
spha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D3Y57_12800
Messenger RNA biogenesis [BR:
spha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D3Y57_12800
Ribosome biogenesis [BR:
spha03009
]
Prokaryotic type
rRNA processing factors
D3Y57_12800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AYJ87969
UniProt:
A0A494TEK3
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All DBs
Position
1485407..1488175
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AA seq
922 aa
AA seq
DB search
MLIDARHREETRVAVVKGNNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFIEYGG
NRHGFMAFSEIHPDYYQIPKEDREALLAEEAEHAAEEERLRGGHDDDDDYADGEHGEHDD
GDHGHHDDEHHDDEDGEVAPRPASQSGRGVDENAAENLRQKRMNLRRRYKIQDVIRRRQV
LLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNVADRKRLKTIMSEL
DLPKSMGCIVRTAGLQRTKIEIRRDFDYLARLWDGIREETLKSAAPALVYQDSDLIKRAI
RDIYNKDIEEVIVEGEEGFRHARDFMKLLMPTHARRVKPYADAVPLFQRNHVEEQLSAMY
QPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEATAVGTNLEAAHEIARQLRLRDM
AGLVVIDFIDMENNSNVRKVEKAMKMALSDDRARIQVGRISSFGLMEMSRQRLRTGVLEA
STRQCPHCEGTGLVRTASSAGLSALRMLEEEAGKGRATIFTLRASTEAAFYVLNRKRFEI
SEIEERFGVHIEVLPDGEVEGARMTVEASGPPPAHPPHFEMPVYEEDPELDLLEEEEEEE
EVEEAPRGDRGERSERPRNAEGEGDGEPRRRRRRRGRRTRRDGEEGTTGEQSEPELDENG
EPIEREAVAPRDAGSNGEEGDDVAVAGETTAEGEERRSRRGRRGGRRRGRGRGGENGQAE
GSEAVEGAEATDGGVAYASNAEPVVEPILAEAEATIEPVAEAKPKRARKRPSKRDAEPVL
AEPVVETVPEVIEAAPVEAVAEKPKRTRRAKAAPVEAAPVETAAPVEDVAPVAAPEPEAV
APVAKPKRASRAKAKVAPAAETETPAPVAVAETVSEASVAGVAQAAAPSPRTSAPAVEPT
AEDGEAERPKRGWWQSTFGANK
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgctaatcgatgcgcgccaccgggaagaaacccgtgtcgcggtcgtcaaaggtaacaac
cggatcgaagagttcgatttcgaatccgccgaacacaagcagctcaagggcaatatctac
ctcgccaaggtaacccgcgtcgaaccatcgctgcaggcggccttcattgaatatggcggc
aatcgccacggtttcatggcgttcagcgaaatccatccggactattaccagatcccgaag
gaagaccgcgaagctctgctcgccgaagaagccgaacacgccgccgaagaagagcgcctg
cgtggcggtcatgatgacgacgatgattatgccgatggcgagcatggtgagcatgacgat
ggcgatcatgggcatcatgacgatgagcatcacgatgacgaggacggcgaagttgccccg
cgccctgcatcgcagagcggtcgtggcgtcgacgaaaacgcagcggagaatcttcgccag
aagcgcatgaatttgcgtcgtcgctacaagattcaggacgtgatccggcgccgccaggtg
ctgttggttcaggtcgtgaaggaagagcgcggtaacaagggcgcggcgctgacgacatat
ctgtcgcttgccggtcgttattgcgtgctgatgcccaacacgtcgcatggcggcgggatc
agccggaaaatttcgaacgtcgccgatcgcaagcgactgaagacgatcatgagcgaactc
gatttgccaaagtcgatgggctgcatcgttcgcacagcaggccttcagcgcaccaagatc
gagattcgtcgcgatttcgattatctcgcccgcttgtgggacggtattcgcgaagagact
ttgaaatcggcagcgcccgcgctcgtctatcaggacagcgaccttatcaagcgcgcgatc
cgcgatatctataacaaggatatcgaggaagtgatcgtcgagggtgaggagggattccgt
cacgcccgcgatttcatgaagctgttgatgccgactcatgcgcggcgggtgaagccctat
gccgacgcggtgccgctgttccagcgcaaccatgtcgaggaacagctttcggcaatgtat
cagccggtcgtccagttgaaatcgggtggctatctggtcatcaacccgacggaagctctg
gtttcgatcgacattaactctggtcgttcgacgcgcgaacatgggattgaggcgactgcg
gtcggcaccaaccttgaagccgcgcacgagatcgcccgtcagttgcgcctgcgcgacatg
gccgggctggtcgtgatcgatttcattgacatggagaacaactccaacgtccgtaaggtc
gaaaaagccatgaagatggcgctgtccgatgaccgcgcccgtattcaggttgggcggatt
tcttccttcggcctgatggagatgagccgccagcgtttgcgcactggcgttctcgaagca
tcgacgcgccagtgcccgcattgcgaaggcaccgggttggtccgcaccgcgtcgtcggcg
ggtctgtcggcacttcggatgcttgaggaagaagcaggcaagggtcgtgcaacgatcttt
accctgcgcgccagcacagaggccgcgttctacgtccttaaccgcaagcgtttcgaaatc
agcgaaatcgaagaacgctttggcgtgcacatcgaagtcctgcccgacggcgaagtcgaa
ggcgcacggatgacggtggaagcaagtggtccgccgcctgcacatccgccgcatttcgaa
atgccggtttacgaggaagaccccgaactcgacctgctcgaggaagaggaagaagaggaa
gaagtcgaggaagcgccccgtggagatcgcggcgagcgttcggaacgtccgcgcaatgcc
gagggtgaaggtgatggcgaaccccgtcgtcgtcgtcgtcgtcgtggacggcgcacgcgc
cgcgatggcgaagagggcacgactggcgaacagtcagagccggaactcgacgaaaatggc
gaaccgatcgaacgcgaagctgttgcgccccgcgacgctggttccaatggcgaagaaggc
gatgatgtcgcggtcgccggtgaaaccacggccgagggtgaagagcgtcgtagccgtcgt
ggacgtcgtggcggccgtcgtcgcggtcgcggtcgtggcggtgaaaatggtcaggctgaa
ggttcggaagctgtcgagggtgcagaagccactgacggtggcgttgcttacgcatcgaac
gccgagccggttgtcgagccgatccttgcggaagcggaagcgacgatcgagcccgttgca
gaagccaagccgaagcgtgcgcgcaagcgtccgtcgaagcgtgatgcagagccagtgttg
gccgagccggtggttgagactgttcctgaagtgatcgaagccgctccggtcgaagctgtt
gcagaaaagccgaagcgcacccgtcgtgcaaaggcagcacctgtcgaagccgcgcctgtc
gaaacagcagcgccggtcgaagacgttgcccctgtggcggctccagagcccgaagcagtc
gctcctgtagccaagccgaagcgcgcgagccgtgccaaggctaaggtggctccggccgcg
gaaacagaaacaccggctcctgtcgctgttgctgaaacggtatctgaagcgtcggttgcc
ggcgttgctcaggcagcggcaccatcgccgcgcacgagcgctcctgcggttgagccaact
gccgaagatggcgaagccgagcggccaaagcgtggctggtggcagagcacgttcggcgcg
aataagtag
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