KEGG   Sphingomonas paeninsulae: D3Y57_13840
Entry
D3Y57_13840       CDS       T05706                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
spha  Sphingomonas paeninsulae
Pathway
spha03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:spha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    D3Y57_13840 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spha03400]
    D3Y57_13840 (uvrB)
DNA repair and recombination proteins [BR:spha03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     D3Y57_13840 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      D3Y57_13840 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII DEAD UVR AAA_30 Kinesin AAA_22 UB2H Microtub_bd DUF87 AAA_16 AAA_33 AAA_7
Other DBs
NCBI-ProteinID: AYJ86833
UniProt: A0A494TIM5
LinkDB
Position
1704418..1706613
AA seq 731 aa
MAIQIRTSLAEPETNESFVPHRPTRPEKTEGSKPFKVVSDYEAAGDQPTAIKELVATALD
GERNQVLLGVTGSGKTFTMARVIEELQRPALILAPNKILAAQLYGEMKSFFPDNAVEYFV
SYYDYYQPEAYVARSDTYIEKESSTNESIDRMRHSATRSLLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGAGADLSEIVRKLVALQYKRNDAAFQRGNFRVRGDNLEIFPSHYEDS
AWRISFFGDEIEGIVEFDPLTGKKSATLDSVRIYANSHYVTPGPTMKQAMDAIKHELSER
LKELVLEGKLLEAQRLEQRTNFDLEMIGATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
ENALLFVDESHVTIGQVNGMSRGDHRRKLTLAEYGFRLPSAIDNRPLRFNEWDAMRPQTV
CVSATPGPWEMEQTGGVFAEQVIRPTGLIDPPVEIKPVEDQVDDVINEIRKVTAQGYRTL
VTTLTKRMAEDLTEYLHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGL
DIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERAMRETDR
RREKQMEYNALHGITPMTIKRNISDVIGHLSSRDQVTIPIDDDRPHMVGHNLRGYIEELE
VKMRKAAGDLEFETAGRIRDEIRSLEAEELGLPAHEQSKAPIMGRSNEGKPGTRKTRYGA
SQKFKSGRVAK
NT seq 2196 nt   +upstreamnt  +downstreamnt
atggcaattcaaatccgcacctcgctcgctgagcctgaaaccaacgagagctttgtcccg
catcgcccgacgcgaccggagaagaccgaggggagcaagccgttcaaggtcgtttccgat
tatgaagcggcgggagatcagccgacggcgatcaaggagcttgtagcgacggcgctggac
ggcgagcgtaatcaggttctgctgggcgtgacggggtcgggcaagaccttcacaatggcg
cgggtgatcgaggagttgcagcggcctgcgctgatccttgcgccgaacaagatattggcg
gcgcagttgtacggggaaatgaagagctttttccccgataatgcggtcgaatatttcgtc
agttactatgattattaccagcccgaagcctatgtcgcgcggtcggatacctacatcgag
aaggaaagttcgaccaacgagtcgatcgatcggatgcgccattcggcgacgcgttcgctg
ctggaacgcgacgatgtgattatcgtggcttcggtgtcgtgcctttacggtatcgggtcg
gtcgagacttattcggcgatgatcttcgatctgaaaaaaggtgcgggtgccgatttgtcg
gagatcgtgcgcaagctcgtcgcgcttcagtataaacgcaacgatgcggcgtttcagcgc
ggaaatttccgggtgcggggcgacaatctggagattttcccgtcgcattatgaagacagc
gcgtggcggatcagtttcttcggtgacgagatcgaggggattgtcgagttcgatccgctg
acggggaagaaatcggcgacgctggattcggtgcggatttacgcgaacagccactacgtc
acgcccggcccgacgatgaaacaggcgatggacgcgatcaagcatgaactgagcgagcgg
ttgaaagagttggtgctggagggcaagttgctggaggcgcagcgtctggagcaacggacg
aatttcgatctggagatgattggggcgacgggcagttgtgcgggcatcgagaattattcg
cggttcctgaccggacgcttgccgggtgaaccgccaccgaccctgttcgaatatctgccc
gaaaatgcgctgctgttcgtggatgagagtcatgtcaccatcgggcaggtcaacggtatg
tcacggggcgatcaccggcggaaactgacgctggcggaatatgggtttcgcctgccgtcg
gccatcgacaaccgaccgctgcgtttcaacgaatgggatgcgatgcgcccgcagacggtg
tgcgtttcggcgacgccggggccgtgggagatggagcagaccggcggcgtttttgccgaa
caggtcattcgtccgactgggttgatcgacccgccggtggagatcaagcccgtcgaggat
caggtcgacgacgtgatcaacgaaatccgcaaggtaacagcgcaggggtatcgaactttg
gtcacgacgctgaccaagcggatggccgaggatttgaccgagtatctgcacgaggcggga
atcaaggtccgttatatgcatagcgatgtcgagacgctggaacgtatcgagttgatccgc
gatctgcggctgggtgtttatgacgtgctgatcgggatcaacctgttgcgcgagggactg
gatattcccgaatgcgggctagtggcgatattggacgccgacaaggaagggtttttgcgg
tcggaaacctcgctgatccagaccatcgggcgcgcggcgcgtaacgtcgacgggcgggtg
atcctctatgccgaccggattaccggcagcatggaacgggcgatgcgcgagacggatcgg
cggcgtgagaagcagatggaatataacgcgctgcacggcatcacgccgatgacgatcaag
cgcaatatttcggacgtgatcgggcatttgtcctcgcgcgatcaggtgacgatcccgatt
gatgacgaccgtccgcacatggttgggcacaatttgcgcggctatatcgaggaacttgag
gtcaagatgcgcaaggccgctggtgatctcgagttcgagactgccgggcggattcgcgat
gagattcgttcgctggaggccgaggagcttggcctgcccgcgcatgaacagtcgaaagcg
ccgatcatgggacggagcaacgagggcaagcccggcacgcgcaagacccgctatggggcg
agccagaagtttaagagcgggcgagtggcaaagtag

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