Sphingomonas paeninsulae: D3Y57_18410
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Entry
D3Y57_18410 CDS
T05706
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
spha
Sphingomonas paeninsulae
Brite
KEGG Orthology (KO) [BR:
spha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spha03016
]
D3Y57_18410 (rnd)
Enzymes [BR:
spha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
D3Y57_18410 (rnd)
Transfer RNA biogenesis [BR:
spha03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D3Y57_18410 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AYJ87526
UniProt:
A0A494TNY7
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Position
complement(2641755..2642942)
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AA seq
395 aa
AA seq
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MKIHPLIEDTATLTEFCARMAKSRFIAVDTEFMRENTFWPDLCLIQVADEHEAAAIDPKA
DGIDMKPLLDLMTENDEVLKVFHAGGQDIEIVHNLTGKTPYPLFDTQIAAMALGQGEQVG
YSNLVDQWIGITLDKGARFTDWARRPLDKRQIDYAIGDVTHLSRIFPMMLDKLVKTGRGD
WLDQEMERLGDPSNYVTEPCDAWKRVKIASRKPEVLGRLRALAGWREHEARNKNLPRGRI
VKDETLGDLAMHPPRTQSDLAKVRGLSSSWAGNDIGARMLAALENAQPMPAELMPARDDR
KPGLGKDGALVADLLKLLLKIRAKESSVAARLLARNEELDLLAAGVRTDLAILTGWRFDQ
FGRDALDLVEGRLAFAVVNGRMKMTRTEDVPQLPV
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcatccgctgatcgaagacaccgctacccttaccgaattctgtgcccgcatg
gcgaagtcgcgctttatcgcggtcgacaccgaattcatgcgggaaaacacattctggccg
gatctctgtcttatccaagtcgcggacgagcatgaggctgcggcgatcgatccgaaagcc
gatggcatcgacatgaagccgttgctcgacctgatgaccgagaatgatgaggtgctgaaa
gtctttcacgcgggtgggcaggacatcgaaatcgtccataacctgacgggcaagacgccc
tacccgctgttcgacacccagattgcagcgatggcgctgggtcagggcgagcaggtcggt
tactccaatcttgtggatcagtggatcggtatcacactcgacaagggcgcgcgctttacc
gattgggcgcggcgtccattagataaacggcaaatcgattatgcgatcggagacgtaacg
catctatcgcggatattcccgatgatgctcgacaagttggtgaagaccggacgcggcgac
tggctcgatcaggagatggagcgccttggcgacccgtcgaattacgtcaccgagccgtgc
gatgcctggaagcgcgtcaagattgccagtcgcaagcccgaggtgctggggcgtctgcgc
gctttagctggatggcgcgagcatgaggcgcggaacaagaacctgccgcgcggccgcatc
gtcaaggatgaaacgctgggcgatctcgccatgcacccaccgcgaacgcagagcgatctc
gccaaggtacgggggctttcgtcgtcatgggccggaaacgacatcggcgctcggatgctg
gctgcactcgaaaacgcacagccaatgcctgccgagctgatgcccgcacgtgatgaccga
aagccggggcttggtaaggacggtgcgctggtggcggacttgctgaagctgctgctgaag
atccgggcgaaggaaagtagcgtcgcggcacggttgcttgcgcgaaacgaagaactggat
ttgctggctgccggggttcggaccgatctggcaattctgacgggctggcgcttcgatcaa
ttcggacgtgatgcgctggatttggtcgaggggcgactggcgtttgcagtcgtcaacggt
cgcatgaagatgacccggaccgaagatgtgccgcaacttccagtctag
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