Sphingobium sp. EP60837: EP837_00133
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Entry
EP837_00133 CDS
T04432
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sphb
Sphingobium sp. EP60837
Pathway
sphb03030
DNA replication
sphb03430
Mismatch repair
sphb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EP837_00133 (dnaE)
03430 Mismatch repair
EP837_00133 (dnaE)
03440 Homologous recombination
EP837_00133 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphb03032
]
EP837_00133 (dnaE)
03400 DNA repair and recombination proteins [BR:
sphb03400
]
EP837_00133 (dnaE)
Enzymes [BR:
sphb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EP837_00133 (dnaE)
DNA replication proteins [BR:
sphb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EP837_00133 (dnaE)
DNA repair and recombination proteins [BR:
sphb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EP837_00133 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
T2SSK
DUF655
tRNA_anti-codon
Scaffold
COE1_HLH
HHH_3
CDH
Motif
Other DBs
NCBI-ProteinID:
ANI76588
LinkDB
All DBs
Position
1:141716..145210
Genome browser
AA seq
1164 aa
AA seq
DB search
MLEGAIEPKKIAKQARALGFPAAAITDRNGLYGSMAFSDACKSEGVQPIIGAMVGILRPG
RPANAAPVHDWIALYAQDQIGYDNLCELVSLAHLDRPVEEVPHVSLDALEGRTDGLIALT
AGAEGALARLFAEDQPAAALDYATGLEALFPDRLYVEICRRLDPIEGKAEAELLDLAYSR
ELPLVATNPTCFAEPHFHQAHDVMLCIADGAYVETPDRRTSSPDAWMKPAAEMKRLFEDL
PEALANTLLVAQRCAVAAPKRKPILPSLAGDIEGEAKMLREQAVEGLEARLAKAAIVDDE
ARKPYFDRLQFETDIIIQMGFPGYFLIVADFIKWAKEQDIPVGPGRGSGAGSVVAWALTI
TDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQKYGVDHVAQIITFGKL
KARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERSLNGVVEFKAEYDNDAQVKRL
IDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYRDPRSDMPVTQFDMKYVEGAGLVKF
DFLGLKTLSVLQKAVQLLAGRGVEVDLSSLGWDDPAVYELLQRGDTVGVFQLESEGMRKT
LAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNGQEEIEYPHILLKPILEETYGIFVY
QEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDAQRARFVDGCAKSDIPAAKANELFD
LIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEFYAASMAFDIHLTDKLTVFVDDMRR
MGLSCLAPDINRSLADFSVEPVEHDGEDNRLGFAVRYALGGLKGVGEKAMEQLVAERDAG
GPFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGIHADRAGVHAAADMILSVAASAAEAR
ESGQGGLFGDVETPHADVRIPPHQTWSTADRMAQEKDAFGFYFSAHPVDRYRHLAEARGA
KSYGAICSEPVAEGGRANAVMAAMVEEVRWRETRRGARYAAATFSDSSGQFQASCFEEDA
CKAIEAMAREGDCALLMVELDRMPGEENPRVTIRSVEQFHQLASASRMELVVDAQDTAAV
EALAELLLNAKGGRSEVFLRAPIAGGKAARLFVGDDYLIGADQVDAIALIPGIVIHRFER
MEPKADGYRARSRRSGFRLVAATA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaggtgcgatcgagcccaagaagatcgcgaaacaggcgcgggccctgggcttt
cctgcggcggcgatcactgaccgtaacgggctctatggctcgatggccttttcggacgcc
tgcaagagcgaaggggttcagccgatcatcggtgcgatggtcggcatcttgcggccggga
cgccccgctaatgcggctccggtgcatgattggatcgcgctctacgctcaggaccagatt
ggatatgacaatctttgcgagctggtctcgcttgctcacctcgatcgcccggttgaagaa
gttccgcatgtctcgctcgacgcgctggaaggccggacggatggcctgattgcccttacg
gcaggtgccgaaggggcgctcgctcgcttgttcgcggaggatcagcccgccgcggcgctg
gattatgccactgggctggaggcgcttttccccgaccggctgtatgttgagatttgccgc
aggctggaccccattgaagggaaagcagaggccgaactgctggaccttgcctacagccgt
gaattgccgctggtcgccaccaatccaacctgctttgccgagccccacttccaccaggcg
catgacgtcatgctctgcattgcagacggcgcttatgtcgaaacgcccgaccgccggacc
agttcgcccgatgcatggatgaagccggcggcggaaatgaagcggctgttcgaggatctt
cccgaggccctcgcaaacacgcttctggttgcgcaacgatgcgccgtggccgcgccaaaa
cgtaagcccatcctgccaagcctagctggtgacatcgaaggcgaagcaaagatgttgcgt
gaacaggcggtggaaggacttgaggcgcgtttggcaaaggcggctattgtcgatgacgaa
gcccgcaaaccctatttcgatcggctccaattcgagaccgatattatcatacagatgggc
ttccccggctacttcctgatcgttgccgatttcattaaatgggccaaggaacaagacata
cccgtgggacccggccgcggttctggcgcaggttctgtcgtcgcctgggcgctgacgatc
accgatctcgatccgctgcaactggggcttctgtttgagcgctttctcaatcccgagcgc
gtctccatgcccgacttcgacatcgacttctgcgaaacgcggcggggcgaggtgatccgc
tatgttcagcagaaatatggcgtggatcatgtcgctcagatcatcaccttcggtaagctg
aaggcgcgagcggtgctgaaggacacaggtcgcgtgctacaaatgagctatggccaagtc
gatcgcctcgccaagctggtgccaaaccatccgacggatccctggacgctggaacgatcg
ctgaacggcgttgtcgagttcaaggccgaatatgacaatgacgctcaggtgaagcgcctg
atcgattatgccatgaagctggagggcttcccccgccatagctcgacacacgccgcgggt
gtggtgattggcgatcgtccgctgtcgcagctcgtgcctctctatcgcgacccgcgctcg
gacatgcccgtgacgcaattcgacatgaaatatgtcgagggcgctggcctcgtaaaattt
gactttctcggccttaaaaccttgtcagtcctgcagaaagcggtccaactgctcgcgggg
cgcggcgttgaggttgatctcagcagcctgggttgggacgacccggcggtttatgaattg
ctccagcgtggcgacacggttggcgtgtttcagttggaatcggaaggcatgcgcaagacg
cttgccgccgttcgtccgaccaatttcggcgacatcattgcgctcgtttcgctgtaccgg
cccggtccgatggacaatattcctatgttcggccgtcgtaaaaacgggcaggaagagatt
gaatatccccatattctgctgaagccgatcctcgaagaaacctacggcatcttcgtctat
caggaacaggtgatgcaggcagcgcagatcctggcgggctattcgctgggggacgccgac
cttctccgccgcgcgatgggcaagaagatcaaggcggaaatggacgcgcagagggcgcgg
tttgtcgatggctgcgcaaagagcgacattccggccgccaaagccaacgaactgttcgac
ttgatcgataaatttgcaggctacggcttcaacaagtcgcacgcggcagcctatgcacta
ctcgcctaccagacggcatggcttaaggcgcattatccggctgaattttatgccgcctcg
atggcctttgacatacatttgacggacaagctgaccgtcttcgttgacgacatgcggcgt
atgggtcttagctgtcttgcgcctgacatcaatcgcagccttgccgatttttccgtagag
ccggtcgagcatgacggagaggataaccggttgggtttcgcggtgcgctatgccttgggt
gggctcaagggcgtgggcgaaaaggcgatggagcagctcgttgctgaacgagacgctgga
ggaccattcaagtcgctcgacgattttgcggacaggatcgaaccacgcctgctcaaccgc
cgacagcttgaaagcttggctgcggcaggagcatttgacggcattcacgccgacagggca
ggcgttcatgctgcagcagatatgatcctgagcgtcgccgccagcgccgccgaggcgcgg
gagagcggacagggcggtttgtttggcgatgtggaaacgccgcatgccgatgtccgcatt
ccgccgcaccagacctggtcaacagctgaccgcatggcgcaggagaaggatgcgttcggc
ttctatttctcggcccacccggttgatcgttatcggcatctggctgaagcgcggggggca
aaaagctatggagccatctgttccgagccggtcgcagagggtgggcgcgccaatgcggtc
atggccgcaatggtcgaggaagtacgttggcgggaaactcggcgcggtgcgcgctacgct
gcggcgaccttctcggatagcagcggtcagtttcaggctagctgctttgaggaagacgct
tgcaaggcgatcgaggcgatggcgcgcgaaggtgactgcgcattgctgatggtggaactg
gatcgcatgccaggcgaggaaaacccccgggttacgatacgaagcgttgagcagtttcac
cagcttgccagtgcctcgcgcatggaactagtcgttgacgctcaggacactgccgccgtc
gaggcgttggccgaattgctgctgaacgccaagggcgggcggagcgaggtatttttgcgc
gcgccgatcgccggaggcaaggcggcgcggttgtttgtgggggatgattatctgattggc
gccgaccaggtggacgccatcgcactgatccctggcatcgttatccatcgcttcgagcgg
atggaaccgaaagcagacggctatcgcgcgcgcagccggcggtccgggttcaggcttgtt
gcggctaccgcttaa
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