Sphingobium sp. EP60837: EP837_01729
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Entry
EP837_01729 CDS
T04432
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sphb
Sphingobium sp. EP60837
Pathway
sphb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP837_01729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphb03019
]
EP837_01729
Messenger RNA biogenesis [BR:
sphb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EP837_01729
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ANI78141
LinkDB
All DBs
Position
1:complement(1768613..1769863)
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AA seq
416 aa
AA seq
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MLEVIVHRGTRAIGGSCIELVASGGERLILDAGRPLDAAREASGLLPETLDRNGPATVLF
SHAHMDHWGLIDELPAHWPLWTGEKAAELMRLTSGLFGTPLSRSISTWRARSGPLALGAF
TVTPFLTDHSAADAYMLLIEAEGRRILYSGDFRCHGRKAALVEAMIANPPPDVDALIVEG
TNLGTHKPVVTEAQLEHDFAQLCREVPGHIFVNWSAQNLDRTVTLFRAAKRTGRSLVVDL
YGADVLERIAPGTGIPFPGDPRFPELQVIITGAGKRLYARQGRYDWVDALARKPYATSRK
RLSGGRAIVMTRDSMVAEFARGGLGFTKRDAYVFSNWRGYLDEAAPNTGWGRARQAGAKA
LHLHTSGHASPSDIARFANAINPRALVPVHGLSWDAPGIDLPPVQRLADGERWSVP
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaggtgattgttcatcgcggcacacgcgcgatcggcggctcgtgcatcgaacta
gtcgcctcaggaggcgagcgcttgatcctggatgctggccggccactcgacgcggcccgc
gaagcctctggcctcctacccgagacactcgatcgcaacggtccggccaccgtcctgttc
agtcacgcgcacatggatcactggggcctgatcgacgaactgcccgcgcactggcctctt
tggaccggagagaaagcagcggaactgatgcggctgacatcgggtctgttcgggacgccg
ctttcccgttcgatctctacttggcgggctaggtcgggtcctctcgccctcggcgcattc
acggtgacaccatttctcaccgaccacagcgccgctgacgcgtacatgctcctgatcgaa
gcagagggccgccgcatactctattctggagattttcgctgtcacgggcgtaaggccgca
ctcgtagaggcgatgatcgccaacccgcccccagatgtcgacgcactgatcgtcgaaggc
acgaacctgggaacccataagcctgtagtcaccgaagcgcagctggagcacgattttgcc
cagctttgccgggaggtgccggggcacatcttcgtaaactggtccgcccagaatctcgac
cggacagtcacattgttccgcgccgcgaagcgcactgggcgttccctggtggtggacctc
tatggcgcagacgtgctggagcggattgcacctggcacagggatccctttccccggcgat
ccgcgcttcccggagttgcaagtaatcattaccggcgccggaaagcgcctctatgcaagg
cagggacggtacgattgggtcgacgctcttgcccggaaaccatatgccacctcccgcaag
cgcctttcaggcggtcgcgcgatagttatgacgcgagactccatggtggcagagttcgcg
cgcggcggcctcggcttcacaaagcgcgatgcatacgtcttctctaattggcgcggctac
ttggacgaagcagcaccaaacacgggttggggacgtgcccggcaggcaggtgcgaaggcc
ctgcacctgcacaccagcggccacgccagcccttccgacatcgctcgttttgccaacgcc
ataaacccccgcgcactagtcccggtgcacggtttgtcctgggatgcccccggaatcgat
cttccgcctgtccagcgccttgccgatggagaacgctggtcagtaccgtga
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