Sphingobium sp. EP60837: EP837_02594
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Entry
EP837_02594 CDS
T04432
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphb
Sphingobium sp. EP60837
Pathway
sphb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP837_02594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphb03019
]
EP837_02594
Enzymes [BR:
sphb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EP837_02594
Messenger RNA biogenesis [BR:
sphb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EP837_02594
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ANI78990
UniProt:
A0A173KZ76
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All DBs
Position
1:2630068..2631444
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AA seq
458 aa
AA seq
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MHFTDLGLAEPILKALAAKKYATPTPIQTQAIPVLLQGKDLCGIAQTGTGKTAAFALPSL
DHFARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRA
LGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKER
QNLFFSATMPGEIESLAAQFLHNPVKVSVAPQSTTAERVRQQATFVNQAEKQALLTLTVK
NEAIDRALIFTRTKHGADRVVRFLEGAGIQAAAIHGNKSQAQRTTALQAFRHGHVKLLVA
TDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDEKPYLKAIE
RTTRIKLDIVPLPENFVEAVRNLPKAAPPRKGREQTPEQKAKRADGQRRYQDDQRQQRGT
AERAHRPDGEAKPAKKNFRRRRGGVGAHKAAVQKTGAR
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcacagaccttggtctcgccgagcccattctaaaggcgctcgccgccaagaaa
tacgccacccccaccccgatccagacgcaggcgattcccgtcctgcttcagggcaaggac
ctgtgcggcatcgcgcagaccggcactggcaagacagccgccttcgcgctgcccagcctt
gaccatttcgcccgtaatcccaagccgaccccgcttcagggttgccggatgctcgtcctg
tcaccaacccgcgaactggccgcccagattgctcagagcttccgtgactatggccgcttc
ctcaagctctcggtcgaagtcgtcttcggcggcgtgcccatcaaccgccagatccgcgcc
ctcggccgcggcgtcgatattgtggttgcaactccgggccgtctcctcgacctgatcgat
cagcgcgccttcaccatcaaggacacggaaatcttcgttctcgacgaggccgaccagatg
atggacatgggcttcatccatccgctgaagcgcatcgccaagctgctcccgaaggagcgg
cagaacctcttcttctccgctaccatgccgggcgagatcgagtctttggccgcgcaattc
ctgcacaatccggtgaaggtcagcgtcgcgcctcagtccaccactgccgagcgtgtccgc
cagcaggcgaccttcgtcaaccaggccgaaaagcaggcgctgctgacgctcaccgtcaag
aatgaggcgatcgaccgcgccctcatcttcactcgcaccaagcatggcgcggaccgtgtc
gtccgcttcctggaaggcgcgggtattcaggccgccgcgatccacggcaacaagagccag
gcgcagcgcaccacggcgcttcaggctttccgccacggtcatgtaaagctgctggtggcg
actgacatcgccgcgcgcggcatcgacgtgtcgggcgtcagccatgtcatcaactttgaa
ctgcccaatgtccccgaacaatatgttcaccgcatcggccgcaccgcacgcgcaggggcg
gaaggcgtcgcgatcagcttcgtggctgacgatgagaagccctatctgaaggcgatcgaa
cggaccacgcgcatcaagctcgacatcgtgccgctgcctgagaatttcgtagaggccgtc
cgcaatcttcccaaggcggcgccgccccgcaagggccgcgagcagacgccggagcagaag
gcgaagcgggccgacggccagcgccgctatcaggacgatcagcggcaacagcgcgggacc
gctgaacgcgctcaccggcccgatggcgaagccaagcccgcgaagaagaacttccgccgg
cgtcgtggaggcgttggtgctcacaaggccgccgtgcagaagactggcgcacgctaa
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