Sphingobium sp. EP60837: EP837_03575
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Entry
EP837_03575 CDS
T04432
Name
(GenBank) UvrABC system protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphb
Sphingobium sp. EP60837
Pathway
sphb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sphb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EP837_03575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphb03400
]
EP837_03575
Enzymes [BR:
sphb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EP837_03575
DNA repair and recombination proteins [BR:
sphb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EP837_03575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
TRCF
DEAD
UvrB_inter
ResIII
CarD_TRCF_RID
AAA_30
Cas3-like_C_2
RecG_dom3_C
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANI79959
UniProt:
A0A173L0C6
LinkDB
All DBs
Position
2:complement(1000242..1003334)
Genome browser
AA seq
1030 aa
AA seq
DB search
MTIAWVATRLADFMGRENLLYLADDDQQAERLAATLSALMPDSRVIFLPSSDTLPGDSAP
ASPANVGQRVAALHALRRAASSPVALIMSGEAAGRAYPPPDAFDVSPPTLRIGDLLTLNE
LAERLTQIGYFPDDRVDEPGEMAIRGEVSDIFPADAGTPVRVELVDGKVASLRAYDPISQ
RTIEELDCIAVGRAAEPLAERPVTILAHLQPGKISYSAKAEKRRQRFLALAAEVKGRDDR
APQEEWEEALGRWEVVALDPPTEIPRFAEQRSPLTAFARFAQPHLDSGRIFILAGGERDL
RFLRSKVQAKLGKDLVELSRWQDVAALPLSSAAIMRLPVDIGFADDRHLFVAAADLLGSR
ALVEDIAASVLPAWTDAATQIQLGDVVIHEDHGVGIALGLEMAPGEDGAETEMIALGYGG
GTRRLIRIADANRIWRYGSDPDAVALDKLDSSSWKKRSGEIEAAVAQTARGLAEMAKVRA
EASAPEMVPDDAAYERFVGGFPHNETADQARAILAVRDDLASGRPMDRLVVGDVGYGKTE
VALRAAAIAALSGYQTIVAAPTTVLVRQHLEGFTARFKPMGIKVASLSRLSSPAEKRAVK
AGLADGSIDIVIGTGAVVGKGVSYAKLGLVVIDEEQKFGAADKKRLRGSAEVHLLALSAT
PIPRTLQSALVGLQQISVIATPPARRQPIRTSLGRFDDSRVRTALMREHGRRGQSFVVVP
RIEDMTSLGERLARLVPDLSIAMAHGKMPAAEIDETMVDFADGKGDILLATNIIEAGLDV
PRANTMIVWRADRFGLAQLHQLRGRVGRGNRRGQVLLLTDKESPIAERTMKRLRALTAFD
RLGAGFEISARDLDMRGAGDLLGDAQAGHMKLIGVDLYQHMLSAAMRQARGEEDERWMPD
IHAGAEGYFPAEWIPDPSIRLSLYIRLARLMEASEIDVFEEELLDRFGTLPDPAEWLLAQ
ARLRASAKDAKIVRIDVGQAGVALTPHAHNSADWSEAGLEARNGRWLLQSPPNSQTALER
AIMVLDRAIG
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgactatcgcctgggttgcgacccggttggcagattttatggggcgcgaaaatctcctc
tatttagctgatgacgatcagcaggctgagcggctagccgctacattatctgccttgatg
ccggacagccgggtgatattcttgccttccagcgacacattgccgggcgacagcgccccg
gcctcccctgccaatgtaggacagcgggttgccgcgctgcacgcgttgcggcgcgcggca
tcatctcctgtcgcgctgatcatgagcggcgaagctgctgggcgcgcctatccgccgccg
gacgcctttgatgtctccccacccacgcttcgcataggcgacctgctgacccttaacgag
ttggcagaacgcctgacccagatcggttattttccggacgaccgagtggatgagccgggc
gagatggctatccgaggcgaggtttccgacatcttcccagccgacgccggaacgccggtc
cgcgtggagcttgtggacggcaaggtggccagccttcgcgcctatgaccccatcagccag
cgaaccatcgaggaactggattgcatcgccgtcggccgagcggcggaacctctggcggaa
cgccccgtcacgatccttgctcatctccagcccggaaagataagctactcggccaaggcg
gaaaagcggcggcagcgcttccttgccttggcggctgaggttaagggccgggatgatcgc
gcgcctcaggaggagtgggaagaagcgctgggacgatgggaggtggtggcactggacccg
ccgaccgagatccctcgctttgctgagcagcggtctccgctaactgccttcgcccgcttc
gcccagccccacctggactctggacgcatcttcatcctcgcaggtggtgagcgcgacctg
cgcttcctgcgcagcaaggtgcaggcaaaattggggaaggacttggtcgaactgtcccgt
tggcaggacgtcgcggcgctccccctctccagcgccgcgatcatgcgcttacccgtcgat
atcggctttgccgatgatcgccacctgttcgtcgcggccgcagacctgcttggcagccgg
gcgctggtcgaggatatagcagcgagcgtactacccgcctggaccgatgcagcgacgcag
atccagttgggcgatgtcgtcattcatgaagatcatggcgtcggcatcgctcttggcctg
gaaatggcgccaggggaggacggcgcagaaactgaaatgattgcgctcggctacggcggc
ggaacacggcggctgatacgcatcgccgacgccaatcggatctggcgctatggttcggac
ccggacgctgtggcgctggacaaactcgacagttcctcatggaagaaacgcagcggggag
atagaggccgcagtcgcccaaactgctcgggggctcgccgaaatggccaaggtgcgcgcg
gaggcaagcgcgcccgaaatggttccggatgacgccgcctatgagcggttcgtgggcggc
tttccccacaatgaaacggcggatcaggcgcgggccatcttggccgtccgcgacgatctg
gcgagcgggcggccgatggacaggcttgtcgtcggcgatgttggctatggcaagacggag
gtggctttgcgcgctgcagccattgcggcgctcagcggttatcagaccatcgttgccgca
ccgacgaccgtgctggtccgccagcatctggaaggttttaccgcccgctttaagccgatg
ggtataaaggtcgccagcctttcccgcctttcatcgccagccgaaaagcgggcggtcaaa
gcgggactggccgatggctccatcgatatcgttattggcaccggcgcagtcgtgggcaag
ggcgtcagctatgcaaagctagggctggtcgtaatcgatgaggagcaaaaattcggtgcc
gccgacaagaagcggctgcgcggctctgctgaggtgcatctgctcgctctaagcgcgacc
ccgatcccccggacactgcagtccgccttggtaggacttcagcagatatccgtcatagcg
accccgccggcacggcgtcagccgatccgcaccagcctgggcagattcgatgacagccgc
gtccgtacggcccttatgcgtgaacatggtcgtcgcgggcagagctttgtcgtcgtgccg
cgcattgaggatatgacctcgctgggcgaaagattagctaggctggtgccggacctttcg
atcgcgatggcccatggtaagatgccggccgctgagatcgacgagacaatggtcgatttt
gccgacggcaagggtgatatcctgttggccaccaacatcatcgaagcaggactggatgtg
ccccgcgccaacacgatgatcgtgtggcgcgctgatcgtttcggcctggcgcagctgcac
cagctgcgagggcgtgtcggacgcggaaatcgcaggggacaggtgctattgttgaccgac
aaggaaagtcccattgccgagcggacgatgaagcgcctgcgcgcgctcactgccttcgac
cgactgggcgccggtttcgagatcagcgcgcgggatctggacatgcggggcgcgggcgat
ctgcttggggacgcgcaggcagggcatatgaagctgatcggggtggacctttaccaacat
atgctgagcgccgcgatgcgccaggcccgtggcgaggaggatgagcgatggatgccggac
attcatgccggtgcggaagggtattttccggcagagtggatacccgacccgtcgattcgc
ctcagtctttacatccgcctagcccgtctcatggaggcatccgaaatcgatgttttcgaa
gaagaattgctcgaccgcttcggcactcttcccgacccagcggaatggctgctggcccaa
gcgcgtttgcgggccagcgcaaaagacgcgaagatcgtgcgcatcgatgtcggccaggca
ggcgtggcccttacgccacatgcgcacaatagcgccgactggtctgaagctggcttagaa
gctcggaatggcagatggctgctacagtctccgccaaattcccaaacagcgctggagcgc
gcaattatggtgctcgatcgggcgataggatag
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integrated database retrieval system
