Sphingomonas psychrotolerans: CVN68_13265
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Entry
CVN68_13265 CDS
T05307
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sphc
Sphingomonas psychrotolerans
Brite
KEGG Orthology (KO) [BR:
sphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphc03016
]
CVN68_13265
Enzymes [BR:
sphc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CVN68_13265
Transfer RNA biogenesis [BR:
sphc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CVN68_13265
Prokaryotic type
tRNA splicing ligases
CVN68_13265
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ATY32823
UniProt:
A0A2K8MG32
LinkDB
All DBs
Position
2955099..2956325
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AA seq
408 aa
AA seq
DB search
MTEALYDFQHVEGGVPIKMWTRGVPVEDGARAQLARAAQMPFVFKHVAAMPDVHIGIGAT
VGSVIPTKGAVIPAAVGVDIGCGMMAARTSLVASDLPDNLEAIRSAIEQAVPHGRSVGRS
KRDTGSWGSPPPAIVEAWATLAQRFDKITDKYPRLKNTNNLVHLGTLGTGNHFIELCLDQ
DQRVWVMLHSGSRGVGNAIGSYFIELAKQDMRKWHINLPDENLAYFPEGTDHFDDYVEAV
GWAQDFAALNRRMMMTNVIRALRGQIAKPFDAELEAVNCHHNYVQRENHFGENVLVTRKG
AVRAAKGVLGIIPGSMGAKSFIVRGLGNPESFDSCSHGAGRVMSRTAAKKLVTLDEHIRD
TAGVECRKDEGVIDETPKAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggctttgtatgatttccagcacgtcgaaggtggcgtgccgatcaagatgtgg
acccgtggcgtgccggtcgaggacggtgcgcgcgcccagcttgcacgtgcggcgcagatg
ccgttcgtgttcaagcacgtggccgcgatgcccgatgtccatatcggcatcggcgcgact
gtcggctcggtgatcccgaccaagggcgcggtgatcccggcggcggtgggcgtcgacatc
ggctgcggcatgatggcggcgcgcacctcgctggtggcgagcgacctgcccgacaatctg
gaggcgatccgttcggccatcgagcaggcggtgccgcacgggcgttcggtggggcgcagc
aagcgtgataccggttcctggggcagcccgccgcccgcgatcgtcgaggcctgggcgacg
ctcgcccagcgcttcgataagatcaccgacaaatatccgcggctcaagaacaccaacaac
ctggtgcatctgggtacgctgggcacgggcaaccacttcatcgagctgtgcctcgaccag
gaccagcgcgtgtgggtgatgctccattcgggttcgcgcggcgtcggcaacgcgatcggc
agctatttcatcgagctggcgaagcaggacatgcgcaagtggcacatcaacctgcccgac
gagaacctcgcttatttcccggagggaaccgatcatttcgacgattatgtcgaggcggtc
ggctgggcgcaggacttcgcggcgctgaaccggcggatgatgatgaccaacgtcatccgc
gcgctgcggggccagatcgccaagccgttcgatgcggagctggaggcagtcaactgccac
cacaactacgtccagcgcgagaaccacttcggtgagaacgtgctggtcacccgcaagggc
gcggtccgcgcggcgaagggcgtgctgggcattatccccggatcgatgggcgccaagtcg
ttcattgtccgggggctgggcaaccccgagtcgttcgacagttgcagccatggcgcgggg
cgcgtgatgtcccgcaccgcggcgaagaagctggtgacgctagacgagcacatccgcgac
accgcgggcgtcgagtgccgcaaggacgaaggcgtgatcgacgaaacgccgaaggcgtac
aagccgatcgaggccgtgatggcggcgcaagccgacctggtcgagatcgtccatacgctc
aagcaggtggtgtgcgtgaagggctaa
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