Sphingomonas psychrotolerans: CVN68_15190
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Entry
CVN68_15190 CDS
T05307
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sphc
Sphingomonas psychrotolerans
Pathway
sphc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVN68_15190 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphc03019
]
CVN68_15190 (pnp)
03016 Transfer RNA biogenesis [BR:
sphc03016
]
CVN68_15190 (pnp)
Enzymes [BR:
sphc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CVN68_15190 (pnp)
Messenger RNA biogenesis [BR:
sphc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CVN68_15190 (pnp)
Transfer RNA biogenesis [BR:
sphc03016
]
Prokaryotic type
tRNA degradation factors
CVN68_15190 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
ManC_GMP_beta-helix
DUF2152
Motif
Other DBs
NCBI-ProteinID:
ATY33143
UniProt:
A0A2K8MH03
LinkDB
All DBs
Position
complement(3354229..3356628)
Genome browser
AA seq
799 aa
AA seq
DB search
MFDKKTVSIEWGGKTLTLETGKVARQADGAVIATLGETVVLCAVTAAKHVKEGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLISRLIDRPLRPLFPEGFYNEINCIAQVLSY
DGENEPDILAMVAASAAMTLSGVPFMGPIGAARVGYDGTDYILNPTDEQVDAGLLDLVVA
ATHDAVMMVESEAKELSEEIMLGAVMFAHRESQKVIDAIIKLAEQAAKEPWELKVQDDKV
EVKAKLKKLIGKDLEAAYKLTDKQARQTAINEARTKARDGLTDLKDSDPQAYLASLKLVK
KLEADIVRTAILKEGRRIDGRDTKTVRPIVAEVHFLPRAHGSALFTRGETQTIATCTLGT
RDSEQMIDGLGGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHGVLPTK
EEFPYTIRLTSDITESNGSSSMASVCGGSLSLMDAGVPIRRPVSGIAMGLILEGKEFAVL
SDILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITEEIMKVALDQAKEGRIHILAEMA
KALDHTREELSAHAPRIETFTIDKSKIREVIGTGGKVIREIVATTGAKVDIDDEGVIKVS
SSDPAQIEAAIKWIKGLVEEAEVGKVYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIRNER
VEKVSDVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAELEDTRPAREPREGGDRGPR
SGGGDRGDRGDRQRGGGGGGRGGDRDRGPRREGGGDRGPRGEGRGDRGPRPPREGGENGS
DKGGDDIGLPAFLTGGSDD
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacaagaagactgtatcgatcgagtggggcggcaagacgctgactctcgaaacg
ggcaaggttgcccgtcaggccgacggcgcggtgatcgcgacgctcggcgagaccgtggtg
ctgtgcgcagtgaccgcggccaagcacgtcaaggaaggccaggacttcttcccgctgacc
gttcactatcaggagaagttctctgccgcgggtcgtatcccgggcggcttcttcaagcgt
gagcgcggcgccaccgagaaggagaccttgatctcccgcctcatcgatcgcccgctccgc
ccgctcttcccggaagggttctacaacgaaatcaactgcatcgcgcaggtgctatcctat
gacggcgagaacgagccggacatcctcgcgatggtcgccgcttcggctgcgatgacgctg
tcgggcgtgcccttcatgggcccgatcggcgcggcgcgcgtcggctatgacggcaccgat
tacatcctcaacccgaccgacgagcaagtcgatgccgggctgctcgacctcgtcgtcgcg
gcgacgcacgacgccgtgatgatggtcgaatccgaagccaaggagctttcggaagagatc
atgctcggcgccgtgatgttcgcgcatcgcgagagccagaaggtgatcgacgcgatcatc
aagctggccgagcaggccgccaaggagccttgggaactcaaggtccaggacgacaaggtc
gaagtgaaggccaagctcaagaagctgatcggcaaggacctcgaggccgcctacaagctg
accgacaagcaggcccgccagaccgcgatcaacgaggcgcgcaccaaggcccgcgacggc
ctgaccgacctcaaggacagcgatccgcaggcctatctcgccagcctcaagctggtgaag
aagctcgaggccgacatcgtccgcaccgcgatcctcaaggaaggccgccgcatcgacggc
cgcgacacgaagacggtccgtccgatcgtcgcggaagtccatttcctcccgcgcgcgcac
ggctcggctttgttcacccgcggcgagacccagacgatcgcgacctgcacgctcggtacg
cgtgacagcgagcagatgatcgatggtctcggcggcctcagctaccagcacttcatgctg
cactataacttcccgccttactcggtcggcgaagtcggtcgcttcggcgcgccgggccgt
cgcgaagtcggccatggcaagctggcatggcgcgcgctgcacggcgtgctgcccaccaag
gaagagttcccctatacgatccgcctgaccagcgacatcaccgagtcgaacggctcgtcg
tcgatggcgtcggtctgcggcggttcgctttcgctgatggacgccggcgtgccgatcagg
cgtccggtctcgggcatcgcgatgggcctcatcctcgagggcaaggaattcgcggttctc
agcgacatcctcggcgacgaggatcacctcggcgacatggatttcaaggttgcgggtacc
tccgaaggcatcaccacgatgcagatggacatcaagatcgccggcatcaccgaagagatc
atgaaggtcgcgctggatcaggccaaggaaggccgcatccacatcctggccgaaatggcc
aaggcgctcgatcacacccgtgaggagctgtcggcgcacgcaccgcgtatcgagaccttc
accatcgacaagtcgaagatccgtgaagtcatcggcaccggcggcaaggtgatccgcgag
atcgtcgccaccaccggcgccaaggtcgacatcgacgacgaaggcgtgatcaaggtctcg
tcctcggatcccgcgcagatcgaagccgcgatcaagtggatcaagggtctcgtcgaagag
gccgaggtcggcaaggtctatgacggcaaggtcgtcaacctcgtcgatttcggtgcgttc
gtgaacttcatgggcggcaaggacggcctcgtccacgtctccgagatccgcaacgagcgc
gtcgagaaggtctcggacgtcctcagcgaaggccaggaagtcaaggtcaaggtcctcgag
atcgatccgcgcggcaaggttcgcctgtcgatgcgcgtcgtcgatcaggagaccggtgcc
gagctcgaagacacccgtccggcgcgcgaaccccgcgaaggtggcgatcgtggcccacgc
agcggtggcggcgatcgcggtgatcgcggtgaccgtcagcgcggcggcggcggcggtggc
cgtggcggcgatcgtgaccgtggtccgcgtcgcgaaggcggcggcgatcgtggtccgcgc
ggcgaaggccgcggcgatcgcggtccgcgtccgccgcgcgaaggcggcgaaaatggtagt
gacaagggcggcgacgatatcggcctgccggcgtttctcaccggcggcagtgacgactaa
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