Sphingomonas psychrotolerans: CVN68_20810
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Entry
CVN68_20810 CDS
T05307
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sphc
Sphingomonas psychrotolerans
Pathway
sphc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVN68_20810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphc03021
]
CVN68_20810
03400 DNA repair and recombination proteins [BR:
sphc03400
]
CVN68_20810
Enzymes [BR:
sphc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVN68_20810
Transcription machinery [BR:
sphc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVN68_20810
DNA repair and recombination proteins [BR:
sphc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVN68_20810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
IDH
Motif
Other DBs
NCBI-ProteinID:
ATY34094
UniProt:
A0A2K8MM49
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All DBs
Position
4587136..4588206
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AA seq
356 aa
AA seq
DB search
MSVNPKNWQELKKPNGLEKKAGGDPKRKSTFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNVKQIAIRMQGEGPKRLQLSATGPAEVKAGDI
AVSGDIEVMNPELVICHLDDGATLNMELTADTGKGYVPAQANRPADAPIGLIPVDALYSP
VRQVSYKVENTRVGQELDYDKLTLTVETDGTITPEDGLAYAARILQDQLSLFVHFDDSAV
TRSAPIGMAAPAAAEGGVASGDTAQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQ
KTEAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMEIPGWPPENIEEMAKKLEQEIMG
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggtgaaccctaagaactggcaggaactcaagaagcccaacggcctcgaaaagaag
gccggtggcgatcccaagcgcaagtcgaccttcgtggccgagccgctcgagcgcggtttc
ggccttacgctcggtaacgcactgcgtcgcgttttgctctcgtcgctgcagggcgccgcg
gtcacttcgatcaagatcgagaatgtgcttcacgaattctcgagccttgccggcgtccgt
gaggacgtgacggacatcgtgctcaacgtgaagcagatcgccatccgcatgcagggcgaa
ggcccgaagcggctccagctctcggccaccggcccggctgaagtgaaggcaggcgacatc
gcagtctcgggcgacatcgaagtgatgaaccccgagctggtgatctgccatctcgacgac
ggcgcgacgctcaacatggagctgaccgccgataccggtaagggctatgtccccgctcag
gccaaccgtccggcggatgcgccgatcggtctgatcccggtcgacgctttgtacagcccg
gtccgccaggtgtcgtacaaggtcgagaatacccgcgtcggccaggagctcgattacgac
aagctcacgctgaccgtcgagaccgacggcacgatcactccggaggacggcctcgcttat
gcggcgcgcatcctccaggatcagctctcgctgttcgtgcatttcgacgattccgcagtc
acgcgctcggcgccgatcggcatggccgctccggcggctgcagaaggtggcgtcgcttcg
ggcgataccgcgcagatcaatcgttaccttctcaagaaggtcgacgagctcgaactgtcg
gtgcgttcggccaattgcctcaagaacgacaacatcatctatatcggcgatctggtccag
aagaccgaagccgagatgctgcgcaccccgaacttcggccgcaagtcgctcaacgagatc
aaggaagtgctttcgagcatgggcctgcgcctgggtatggaaatccccggctggccgccc
gagaacatcgaagagatggccaagaagctcgagcaggaaatcatgggctga
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