Sphingomonas psychrotolerans: CVN68_21140
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Entry
CVN68_21140 CDS
T05307
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
sphc
Sphingomonas psychrotolerans
Brite
KEGG Orthology (KO) [BR:
sphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphc03032
]
CVN68_21140
03036 Chromosome and associated proteins [BR:
sphc03036
]
CVN68_21140
03400 DNA repair and recombination proteins [BR:
sphc03400
]
CVN68_21140
DNA replication proteins [BR:
sphc03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CVN68_21140
Chromosome and associated proteins [BR:
sphc03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
CVN68_21140
DNA repair and recombination proteins [BR:
sphc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
CVN68_21140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
SnoaL_4
Motif
Other DBs
NCBI-ProteinID:
ATY34152
UniProt:
A0A2K8MJT5
LinkDB
All DBs
Position
complement(4645530..4645808)
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AA seq
92 aa
AA seq
DB search
MIRSELVQLLVDDNPGLSAREVEKIVSVFFDDIVGRLTEDGRVELRGFGAFSTRARDGRT
GRNPRTGETVDVAPKRVPYFKPGKEMRVRLNV
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgatccgttcggaactcgtgcaattgttggtggatgacaatcccggcctgtcggcacgc
gaggtcgagaagatcgtctcggtcttcttcgatgacattgtcggccgcctgaccgaggat
ggccgcgtcgagctgcgcggcttcggcgccttctccacccgcgcgcgcgacggtcgcact
ggccgcaatccgcggaccggggaaaccgtcgacgtcgcgcccaagcgcgtgccctatttc
aagcccggcaaggaaatgcgcgttcgcctcaacgtctga
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