Rhizorhabdus wittichii DC-6: HY78_00015
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Entry
HY78_00015 CDS
T05200
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HY78_00015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphd03400
]
HY78_00015
Enzymes [BR:
sphd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HY78_00015
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HY78_00015
DNA repair and recombination proteins [BR:
sphd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HY78_00015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ARR51954
LinkDB
All DBs
Position
complement(2227..3039)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTVRGLRPPLEGRRLTRVETRRADLRRPFPADLRQRMTGATITGLGRRAKYG
LIETDRGDVMVFHLGMSGRWRIDPSEIGAHDHLVLETDEGRTLSLCDPRRFGSVDLVRGE
ELAGFGPFKALGPEPLGPDLTGAHLAGALEGRVAPIKAMLLDQRIVAGLGNIYVCEALHM
TGIAPTTMAGRIAKKRLDRLVDSIREVLAAAIEAGGSTLRDYARPDGELGYFAKQWRVYG
REGEPCHCGTVIRRRVDGGRSTFYCPKCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcttcccgaagtagaaaccaccgtccgcggcctgcgtcccccgctcgagggg
cggcggctgacccgggtcgagacccgccgcgccgacctgcggcgcccctttccggccgac
ctgcgccagcggatgaccggggcgacgatcaccgggctcggccgccgcgccaaatatggc
ctgatcgagaccgatcgcggcgacgtgatggtcttccacctcggcatgtcgggccgctgg
cggatcgacccgagcgagatcggcgcgcacgatcatctggtgctggagaccgacgagggg
cggacgctgtcgctgtgcgacccgcgccgcttcggatcggtcgacctcgtccggggcgag
gaactcgccgggttcggcccgttcaaggcgctggggcccgagccgctgggccccgatctg
accggcgcccatctcgccggggcgctcgaagggcgcgtcgcgccgatcaaggcgatgctg
ctcgaccagcggatcgtcgccgggctcggcaacatctatgtgtgcgaggcgctgcacatg
accggcatcgcgccgaccaccatggcgggccggatcgcgaagaagcggctcgaccggctg
gtcgattcgattcgcgaggtgctggcggcggcgatcgaggcgggcggctccacgctgcgc
gactatgcccggcccgacggcgagctcggctatttcgccaagcagtggcgcgtctatggc
cgcgaaggcgagccgtgccattgcggcaccgtgatccggcgccgcgtcgatggcggccga
tcgaccttctactgccccaaatgccagaaatag
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