Rhizorhabdus wittichii DC-6: HY78_04985
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Entry
HY78_04985 CDS
T05200
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HY78_04985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphd03019
]
HY78_04985
03009 Ribosome biogenesis [BR:
sphd03009
]
HY78_04985
Enzymes [BR:
sphd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HY78_04985
Messenger RNA biogenesis [BR:
sphd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HY78_04985
Ribosome biogenesis [BR:
sphd03009
]
Prokaryotic type
rRNA processing factors
HY78_04985
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ARR52846
LinkDB
All DBs
Position
complement(1035968..1038598)
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AA seq
876 aa
AA seq
DB search
MLIDARHREETRVAVVQGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEEALRAREAEHDDDGEEIEDDGHDH
HDDHDHDEDGEGGEERPRARRESVGGGSDDGAVENLRQRRMNLRRRYKIQDVIRRRQVLL
VQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKSIMAELNL
PKTMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTLGSQAPALIYGDSDLIKRAIRD
IYNRDIDEVVVEGEEGYRQARAFMKLLMPSHAKKVGLYADAVPLFQRFGVEDQLAAMYQP
IVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAHEIARQLRLRDMAG
LIVIDFIDMENNSNIRKVEKAMKEALKNDRARIQVGRISSFGLFEMSRQRLRTGVLEAST
RQCPHCEGTGLIRTASSAGLSALRMLEDEAARGRGSRLLLRASQEAAFYVLNRKRAELAE
IEERYGVVIEIVSDGTLEGARMSVEAGGPPPSHAPRLPAPLPIEADDDIEEEIEDEEEEE
IAAEDEGQEDGERGDGNRRRRRRRRRRGGRGRDQDGQGEAGQADEAGETDEADEPSEEAE
EAAAEDGSAEPRGRRRRGRRSGRRRGGEGAETEGEAIEQAEAPLSEPVAEDAPVAAESEA
VAEEAAPAEPAPKTRRRPRARKADAAPVEAVETPAEEAAPVAAEPEAEPVAEAPKPRRGG
RRKKAEVEAEAAAAPAAVEAAPVEAAAAEPEAEPAAEAAPKRRTRSRAKAAAAAPAETVE
AVAEVSEPAGEAASAEEAEEDGGSPRRGWWQRTFGA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcgacgcacgccaccgggaggaaacccgcgtggcggtcgtccaggggaaccgg
atcgaggaatttgactttgagtctgccgagcgcaagcagctcaaggggaatatctatctc
gccaaggtaacgagggtcgaaccgtcgcttcaggcggcgttcgtcgactatggcggcaac
cgccacggcttcctcgccttctcggaaatccaccccgattattatcagatccccaaggag
gaccgcgaggcgctgctccgcgaggaggccgagcacgccgccgaggaagaggcgctgcgt
gcccgcgaggcggagcatgacgacgacggcgaggagatcgaggacgacggccacgatcac
catgacgaccatgatcatgacgaagacggcgaaggtggcgaggaacgcccccgtgcgcgc
cgcgaatcggtcggcggcggttccgacgacggcgccgtggagaatctgcgccagcgccgg
atgaacctgcgccgccgctacaagatccaggacgtgatccgccggcggcaggtgctgctg
gtccaggtcgtcaaggaggagcgcggcaacaagggcgcggcgctgaccacctatttgtcg
ctggccggccgctattgcgtgctgatgccgaacaccagccatggcggcggcatcagccgc
aagatctcgaacgcggccgaccgcaagcggctcaagtcgatcatggccgagttgaacctg
ccgaagacgatgggctgcatcgtccgcaccgccggcctccagcgcaccaagaccgagatc
aagcgcgacttcgactatctcgcccgactgtgggacgagattcgcgagaacacgctcggt
tcgcaggcgccggcgctgatctacggcgacagcgacctgatcaagcgcgcgatccgcgac
atctacaaccgagacatcgacgaggtcgtggtcgagggcgaggagggctatcgacaggcc
cgcgccttcatgaagctgctgatgccgagccacgccaagaaggtcgggctctatgccgac
gcggtgccgctgttccagcgcttcggcgtcgaggaccaactcgcggcgatgtaccagccg
atcgtccagctcaagtcgggcggctatctggtgatcaacccgaccgaggcgctggtgtcg
atcgacatcaactcgggccggtcgacccgcgagcataatatcgagcagaccgcgaccgcg
accaacctcgaggccgcgcacgagatcgcccgccagctccgcctgcgcgacatggcgggc
ctgatcgtcatcgacttcatcgacatggagaacaactccaacatccgcaaggtcgagaag
gcgatgaaggaggcgctcaagaacgatcgcgcccgcatccaggtcggccgcatctccagc
ttcggcctgttcgagatgagccgccagcgcctgcgcaccggcgtgctcgaggcctcgacc
cggcagtgcccgcattgcgagggcaccggcctgatccgcaccgcctcctcggcgggcctg
tcggcgctgcgcatgctcgaggacgaggccgcgcgcggccgcggctcgcgcctgctgctg
cgcgccagccaggaagccgccttctacgtcctcaaccgcaagcgcgccgagctggccgag
atcgaggagcgctacggcgtcgtcatcgagatcgtctccgacggcacgctcgaaggcgcg
cggatgagcgtcgaggccggcggtccgccgccgagccatgcgccgcgcctgcccgcgccg
ctcccgatcgaagccgatgacgacatcgaggaggagatcgaggacgaagaggaggaggag
atcgccgccgaggacgaaggccaggaggatggcgagcgtggcgacggcaatcgtcgccgt
cgccgtcgtcgccgtcgtcgtggcggtcgcggtcgcgatcaggatggccagggcgaggcc
ggccaggccgatgaggccggcgagaccgacgaagccgacgagccttccgaggaggccgag
gaggccgccgccgaggatggctccgccgagccgcgcggccgtcgccgccgtggccgtcgc
tcgggccgtcgccgtggcggtgaaggcgccgagaccgagggtgaggcgatcgaacaggcc
gaggctccgctgagcgagccggtggccgaggacgcgccggtcgcggccgagtccgaagcc
gtcgccgaggaagcggcccccgccgagccggcaccgaagacgcgccgccggccgcgtgcc
cgcaaggccgatgccgcccccgtcgaggctgtcgagacgccggccgaggaggcagcgccc
gtcgccgccgagcccgaggccgaaccggtcgccgaggcgcccaagccgcgccgtggcggt
cgccgcaagaaggctgaggtcgaggcggaagccgctgcggcccccgccgccgtggaagct
gcgccggtcgaagccgctgcggccgagccggaagccgagcctgccgcggaagccgcgccc
aagcgccgcacccgttcgcgggccaaggccgccgctgccgcgccggccgagaccgtcgag
gccgtggctgaagtctccgagcctgccggcgaagccgcctccgccgaagaggcggaagag
gacggcggttcgccgcgccgcggctggtggcagcggaccttcggcgcctga
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