Rhizorhabdus wittichii DC-6: HY78_05255
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Entry
HY78_05255 CDS
T05200
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HY78_05255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphd03019
]
HY78_05255
03009 Ribosome biogenesis [BR:
sphd03009
]
HY78_05255
Enzymes [BR:
sphd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HY78_05255
Messenger RNA biogenesis [BR:
sphd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HY78_05255
Ribosome biogenesis [BR:
sphd03009
]
Prokaryotic type
rRNA helicases
HY78_05255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
SecA_DEAD
AAA_22
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
ARR52896
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All DBs
Position
1097957..1099738
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AA seq
593 aa
AA seq
DB search
MPFSSLPRPVAEAITERGYTAPTPVQAQVIAAEAHDRDLLVSAQTGSGKTVAYGLAIAET
LLQGAEALPRAGEPLALIIAPTRELALQVQRELQWLYAKLGARVVSCVGGMNVRVEQRQL
SYGCHIVVGTPGRLKDHLERGALQPGSLRAVILDEADEMLDLGFREDLEEILDLTPPERR
TLLFSATMPKPIALLAKRYQRDALRIQTTSERESHADIDYRAMAVAPADIQNAVVNVLRF
HEAKGAMVFCATRENVRRLSATLTERGFSAVTLSGELSQNERNHALQALRDRRARVCVAT
DVAARGIDLPGLELVIHAELPIDPETLQHRSGRTGRAGRKGTCVLITPYQRRRHAERLLR
GANVNATWDKVPTPDEIYARDQERLLESLSVGEISDEDLDVARKLLETRSAEEIAAAFVR
TQRQSLPAPEDLIDASPIARGDREQATREQGPRPGFEDTVWFRMNVGRGANADPRWLLPL
LCRRGHITKREVGAIRIFQTETRFEIPRAIAGKFTDALKRTAGEEDGVVIEPAGDAPTPP
PAQLRDRRGPPPGGPRGPRAPGGPGGFGGAPRGHGGPKRYGAKPFKGGGRKPS
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttcctccctgccccggcccgtcgccgaggctatcaccgagcgcggctacacc
gcccctacccccgtccaggcgcaggtgatcgccgccgaggcgcacgaccgcgacctgctc
gtctccgcccagaccgggtcgggcaagaccgtcgcctacggcctcgccatcgccgagacg
ctgctgcagggcgccgaggccctgccccgcgccggcgagccgctcgccctgatcatcgcc
ccgacccgcgagctcgcgctccaggtgcagcgcgagctgcaatggctctacgccaagctc
ggcgcgcgggtggtgagctgcgtcggcggcatgaacgtgcgcgtcgagcagcggcagctc
agctatggctgccacatcgtcgtcggcacgccgggccggctcaaggaccatctcgaacgc
ggcgcgctccagcccggatcgctgcgcgcggtgatcctcgacgaggccgacgagatgctc
gacctgggcttccgcgaggatctggaggagatcctcgacctgaccccgcccgagcgccgc
acgctgctcttctcggcgacgatgcccaagccgatcgccctgctcgccaagcgctaccag
cgcgacgcgctgcgcatccagacgaccagcgagcgcgaatcccatgccgatatcgactat
cgcgcgatggccgtcgccccggccgacatccagaacgccgtcgtcaacgtcctgcgcttc
cacgaagccaagggcgcgatggtgttctgcgccacgcgcgagaatgtccgtcgcctgtcg
gcgacgctgaccgagcgcggcttctcggccgtcaccctgtcgggcgagctcagccagaac
gagcgcaaccacgcgctccaggcgctgcgcgaccgccgcgcgcgggtttgcgtcgcgacc
gacgtcgcggcgcgcggcatcgaccttccgggcctcgagctggtgatccatgccgagctg
ccgatcgatcccgagacgctccagcaccgctcgggccgcaccggccgcgcgggccggaag
ggcacctgcgtcctcatcaccccctatcagcgccgccgccatgccgagcggctgctgcgc
ggcgccaacgtcaacgccacctgggacaaggtgccgacgcccgacgagatttatgcgcga
gaccaggaaaggctgctcgaaagcctgtcggtcggcgaaatctccgacgaggatctggac
gtcgcgcgcaagctgctcgagacgcgcagcgccgaggagatcgccgccgccttcgtccgc
acccagcgacagagcctgccggcgcccgaagacctgatcgacgcctcgccgatcgcccgt
ggcgaccgcgaacaggcgacccgcgagcagggtccgcgccccggtttcgaggacacggtc
tggttccgcatgaacgtcggccgcggcgccaacgccgatccgcgctggctgctgccgctg
ctctgccgtcgcggccacatcaccaagcgcgaggtcggcgcgatccgcatcttccagacc
gagacccgtttcgagattccgcgcgccatcgcgggcaagttcaccgacgcgctgaagcgc
accgccggggaagaggacggcgtcgtcatcgaacccgccggcgacgcgccgaccccgccc
cccgcccagctccgggaccgccgcggaccgccgccgggaggcccgcgcggcccccgcgct
ccgggcggacccggcggcttcggcggggccccgcgcggccatggcggaccgaagcgctac
ggcgcgaagccgttcaagggcggcggtcgcaagccttcgtga
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