Rhizorhabdus wittichii DC-6: HY78_06965
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Entry
HY78_06965 CDS
T05200
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HY78_06965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphd03021
]
HY78_06965
03400 DNA repair and recombination proteins [BR:
sphd03400
]
HY78_06965
Enzymes [BR:
sphd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HY78_06965
Transcription machinery [BR:
sphd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HY78_06965
DNA repair and recombination proteins [BR:
sphd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HY78_06965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
AAA_27
Motif
Other DBs
NCBI-ProteinID:
ARR53199
LinkDB
All DBs
Position
1463570..1467841
Genome browser
AA seq
1423 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVIEPGLTPLEKYQLLNEDELLEAQDEYGEDAFSAG
IGAEAVRRMLEELDLEGEKEDLLKELAETKSELKPKKIIKRLKVVESFLESGNRPEWMIL
EVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QESVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMLKEGEPGEGSLIADMQEVHQALAA
KAVTLHTKIISRVPQTDEDGNQYMKRVETTPGRMLLGETLPKSHKVPFETVNRLLTKKEI
GDVIDIVYRHTGQKETVLFADAIMALGFRHAFQAGISFGKDDMIIPEAKEKEVEETRLLV
KDFEQQYQDGLITQQEKYNKVIDAWSRCGDRVAAEMMKEISAVKKGADGREKPINAIYMM
AHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVVEVDCGTDRALDMKAIVQGGATIASLGERILGRTAA
EDIVDSKTNEVLIAEGTLLDEAMVAAVEAIGIQSVKIRSPLVCESKGGVCAACYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLESVADGSIEYRELRTI
TDPRGRRVSLSRSGEVAIIDSEGRERATHRLPYGAHLLLDDGAAVAKGDRIAEWDPFTMP
VITETGGIVKYQDLIDNQTLTEQTDEATGISQKVVIEYRATSRKEDLRPRLTLLDDSSGE
TARYMLAPGAMLSVEDGQEVKAGEVLARVSRESAKTRDITGGLPRVAELFEARKPKENAI
IAKVSGRVEFGKDYKAKRKIIIRPDDGSEPVEYLVPKSKVIDVQEGDYVKRGDNLIGGSP
DPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITDGGDTTLL
PGEQVDREEMDEINAKADAEGRTIAQGKPVLLGITKASLQTRSFISAASFQETTRVLTDA
SVQGKVDTLNGLKENVIVGRLIPAGTGAGMSRLRVTASSRDAALRAAQRNWQESLIAPQT
AAEEHAAELRQPVQADTGDDPLGAVVGESHGTDADAGDYLTEE
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaatttcgccaatccggtcgcgaagcccgagaccttcgaccagatc
cagatcggcatcgccagcccggagcgcatccgcagctggtccttcggtgagatcaagaag
ccggagacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgagaagtgcggcgtcgaggtcaccgtctcgaaggtccgccgcgag
cggatgggccatatcgagctggccgccccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcattggcctgctgctcgacatgcagctcaagcagctcgagcgggtgctctac
ttcgagagctacatcgtcatcgagccgggcctgaccccgctggagaagtatcagctcctc
aacgaggacgagctgctcgaggcgcaggacgaatatggcgaggacgccttctcggccggg
atcggcgccgaggcggtccgccgcatgctggaggagctcgacctcgaaggcgagaaggag
gacctcctcaaggagcttgccgagaccaagtccgagctcaagcccaagaagatcatcaag
cggctcaaggtcgtcgagagcttcctggaatcgggcaaccgccccgagtggatgatcctc
gaggtgatcccggtcatcccgccggatctccgcccgctcgtgccgctcgacggcggccgc
ttcgcgacgtcggacctcaacgacctctatcgtcgcgtcatcaaccgcaacaaccgcctc
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgagaagcgcatgctg
caggagtcggtcgacgcgctgttcgacaacggccgccgcggccggacgatcacgggcgcc
aacaagcgcccgctgaagtcgctcagcgacatgctgaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgctcggtgatcgtcaccggtccg
gagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccggctcgacgccaagggcctgtcgatgacgctcaagcaggccaagaag
tgggtcgagaaggagcgcaaggaggtctgggacatcctcgacgaggtgatccgcgagcat
ccggtgctgctcaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagctccacccgctggtctgctcggccttcaacgcc
gacttcgacggtgaccagatggcggtccacgtgccgctgtcgctggaggcgcagctcgaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgcgaacggcaagccgatc
atcgtcccgtcgcaggacatggtgctgggcctctattatctgtcgatgctgaaggaaggc
gagccgggcgagggatcgctgatcgcggacatgcaggaggtccaccaggcgctggccgcc
aaggcggtgacgctgcacaccaagatcatcagccgcgttccgcagaccgacgaggacggc
aaccagtacatgaagcgcgtcgagacgacgccgggccgcatgctgctcggcgagacgctg
ccgaagagccacaaggttccgttcgagacggtcaaccgcctgctgaccaagaaggagatc
ggcgacgtcatcgacatcgtctatcgccacaccggccagaaggagacggtgctgttcgcc
gacgcgatcatggcgctgggcttccgccacgccttccaggccggcatctcgttcggcaag
gacgacatgatcatccccgaagccaaggagaaggaggtcgaggagacccgtctgctggtg
aaggacttcgagcagcaatatcaggacggcctgatcacgcagcaggagaagtacaacaag
gtgatcgacgcctggtcgcgttgcggcgaccgcgtggcggccgagatgatgaaggagatc
tcggcggtcaagaagggcgccgacggccgcgagaagccgatcaacgcgatctacatgatg
gcgcactccggtgcccgcggcagcgccgcgcagatcaagcagctcgccggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaa
ggcctgaccgtcctcgagtacttcaactcgacccacggcgcccgcaagggtctcgccgac
accgcgctcaagacggcgaactcgggctacctgacccgccgtctggtcgacgtgtcgcag
gactgcgtcgtcgtcgaggtcgattgcggcaccgaccgcgcgctcgacatgaaggcgatc
gtccagggcggcgccaccatcgcgtcgctcggcgagcgcatcctgggccgcaccgcggcc
gaggacatcgtcgattcgaagaccaacgaggtcctgatcgccgagggcacgctgctcgac
gaggcgatggtcgcggcggtcgaggcgatcggcatccagtcggtcaagatccgcagcccg
ctggtctgcgaatcgaagggcggcgtctgcgcggcctgctacggccgtgacctcgcccgc
ggcacgccggtgaacatcggcgaagcggtcggcgtcatcgcggcgcagtcgatcggcgag
ccgggcacccagctgacgatgcggaccttccacatcggcggcgcggcgcagctcaacgag
cagtcgaacctcgaatcggtcgccgacggcagcatcgagtatcgcgagctccgcacgatc
accgatccgcgcggacgccgcgtctcgctgagccgcagcggcgaggtggcgatcatcgac
agcgagggccgcgagcgcgcgacccatcgcctgccctatggcgcgcacctgctgctcgac
gacggcgcagccgtcgccaagggcgatcgcatcgccgaatgggaccccttcaccatgccg
gtgatcaccgagaccggcggcatcgtgaagtatcaggacctgatcgacaaccagacgctc
accgagcagaccgacgaagccaccggcatcagccagaaggtcgtcatcgagtatcgcgcc
accagccggaaggaagacctccgtccgcgcctgacgctgctcgacgacagctcgggcgag
accgcgcgctacatgctggcgccgggcgcgatgctctcggtcgaggacggccaggaggtg
aaggccggcgaggtgctcgcccgcgtcagccgcgagtccgccaagacccgcgacatcacc
ggcggtctgccgcgcgtcgccgagctgttcgaggcgcgcaagcccaaggagaacgcgatc
atcgccaaggtctcgggccgcgtcgaattcggcaaggactacaaggccaagcgcaagatc
atcatccgtccggacgatggttcggagccggtcgagtatctggtgccgaagtcgaaggtc
atcgacgtgcaggaaggcgactacgtcaagcgcggcgacaacctgatcggcggctcgccc
gatccgcacgacatcctcgaggtgctcggcatcgagccgctcgccgaatatctcgtgtcg
gaaatccaggaggtctatcgcctccagggcgtgaagatcaacgacaagcacatcgagacg
atcgttcgtcagatgctgcagaaggtcgagatcaccgacggcggcgacaccaccctgctc
cccggcgagcaggtggaccgcgaggagatggacgagatcaacgccaaggcggatgccgag
ggccgtacgatcgcgcagggcaagcccgtgctgctcggcatcaccaaggcctcgctccag
acccgctcgttcatctcggccgcgtcgttccaggagacgacccgcgtcctcaccgacgcg
tcggtgcagggcaaggtcgacacgctgaacggcctcaaggagaacgtcatcgtcggccgc
ctgatcccggcgggcaccggcgccggcatgagccgcctgcgcgtcaccgccagcagccgc
gacgccgcgctccgcgccgcgcagcgcaactggcaggagtcgctgatcgcgccgcagacc
gccgccgaggagcatgccgccgagctgcgccagccggtccaggccgacaccggcgacgat
ccgctcggcgcggtggtcggcgaatcgcacggcaccgacgccgatgcgggcgattacctg
accgaggagtga
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integrated database retrieval system
