Rhizorhabdus wittichii DC-6: HY78_10975
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Entry
HY78_10975 CDS
T05200
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphd03016
]
HY78_10975
Enzymes [BR:
sphd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HY78_10975
Transfer RNA biogenesis [BR:
sphd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HY78_10975
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ARR53910
LinkDB
All DBs
Position
complement(2278147..2278764)
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AA seq
205 aa
AA seq
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MTVHLHQEDLPADALGPGPVAVDTETMGLITPRDRLCLVQISDGRGDEHLVRFAPGSDYA
APNLRAVLADPARLKLYHFARFDLAAIRHYIGVMAAPVYCTKTASRLIRTYTDRHGLKEL
VRELLGQEVSKQQQSSDWGAPDLSEAQKDYAASDVRYLHAMRTILDERLAREGRTALAQA
CFDFLPARAELDLAGWPEIDIFAHV
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgacagtccatctccatcaggaagacctgcccgccgacgcgctcggccccggcccggtc
gcggtcgacaccgagacgatggggctgatcaccccgcgcgaccggctctgcctcgtccag
atctccgacgggcgcggcgacgagcatctcgtccgcttcgcccccggcagcgactatgcc
gcgccgaacctgcgcgcggtgctcgccgatccggcccggctcaagctctaccatttcgcg
cgcttcgacctggcggcgatcaggcattatatcggggtgatggccgcgccggtctattgc
accaagacggcgtcgcggctgatccgcacctataccgaccgccacggcctcaaggagctg
gtgcgcgagctgctcggccaggaggtgtcgaagcagcagcaatcgtccgactggggggcg
cccgacctgtccgaggcgcagaaggactatgccgcgtccgacgtccgctatctccacgcg
atgcggacgatcctcgacgagcggctggcgcgcgagggacggaccgcgctggcgcaggcc
tgcttcgacttcctgcccgcccgcgccgagctcgacctcgccggctggccggagatcgac
atcttcgcgcatgtttga
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