Rhizorhabdus wittichii DC-6: HY78_11185
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Entry
HY78_11185 CDS
T05200
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd00300
Lysine biosynthesis
sphd00470
D-Amino acid metabolism
sphd01100
Metabolic pathways
sphd01110
Biosynthesis of secondary metabolites
sphd01120
Microbial metabolism in diverse environments
sphd01230
Biosynthesis of amino acids
Module
sphd_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
HY78_11185
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
HY78_11185
Enzymes [BR:
sphd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
HY78_11185
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ARR53950
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All DBs
Position
2323877..2325148
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AA seq
423 aa
AA seq
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MDHFNLKDGVLHAEDVALPAIAEAVGTPVYVYSTATIERHVAVFKAALAAVESGPEGPLI
AFAVKANPNRAVLATLARAGLGADVVSGGELLRARAAGIPADKIVFSGVGKTEAEMRLGL
EQGIFQFNIESEPEAEMLSEVAAATGRRAPVAFRINPNVIAGTHAKISTGGSEDKFGVAY
DRAIAAYARAAELPGLDVRGVAVHIGSQLTDLGPSRAAFEKIGALIAELRAAGHRIVTAD
LGGGLGVPYDPAKPVPPLPDAYGAMVREVTAGWDTRLVFEPGRVIVGNAGVLLSRVIRVK
PGVTDPFVIVDAAMNDLMRPSLYDAWHDIRAVTPNGAAMTANIVGPICESGDSFAKKRAM
DAVGPGDLVTFMTAGAYGATMANTYNSRALTPEVLVNGDQWAVVRERQPIEALIAADKLP
PWV
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggaccatttcaacctgaaggacggcgtcctccacgccgaggacgtggcgctgcccgcg
atcgccgaggcggtggggacgccggtctatgtctattcgaccgcgacgatcgagcggcat
gtcgcggtgttcaaggccgcgctcgccgccgtcgaatcggggcccgaggggccgctgatc
gccttcgcggtgaaggccaatcccaaccgcgcggtgctggcgacgctcgccagggccggg
ctcggcgccgacgtggtgtcgggcggcgagctgctgcgcgcgcgcgccgccggcatcccc
gccgacaagatcgtcttctcgggcgtcggcaagaccgaggcggagatgcggctcggcctc
gaacagggcatcttccagttcaacatcgaatccgagcccgaggccgagatgctctccgag
gtcgcggcggcgacgggccggcgcgcgccggtcgccttccgcatcaacccgaacgtgatc
gcgggcacccacgccaagatctcgaccggcgggtcggaggacaaattcggcgtcgcctat
gaccgcgcgatcgccgcctatgcgcgcgcggccgagttgcccgggctcgacgtccgcggc
gtcgcggtccacatcggcagccagctcaccgacctcggcccgtcgcgcgccgccttcgag
aagatcggcgcgcttatcgccgaactgcgcgccgccgggcaccgcatcgtcaccgccgat
ctgggcggcggcctcggcgtcccctacgacccggccaagccggtgccgccgctgcccgac
gcctatggcgcgatggtgcgcgaggtgacggcgggctgggacacgcggctggtcttcgag
cccggccgggtgatcgtcggcaatgccggggtgctgctgtcgcgggtgatccgggtcaag
cccggcgtcaccgatccgttcgtcatcgtcgacgcggcgatgaacgacctgatgcggccc
agcctctacgacgcctggcacgatatccgcgcggttacgccgaacggtgcggcaatgacg
gccaacatcgtcggccccatctgtgaaagcggcgacagtttcgccaagaagcgggcgatg
gacgccgtcggtcccggcgacctcgtcaccttcatgacggcgggagcctatggggcgacg
atggccaacacctataactcgcgcgcgctgacgcccgaggtgctggtgaacggggaccaa
tgggcggtcgtccgggagaggcagccgatcgaggcgctgatcgcggcggacaagctcccg
ccgtgggtgtga
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