Rhizorhabdus wittichii DC-6: HY78_16035
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Entry
HY78_16035 CDS
T05200
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HY78_16035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphd03019
]
HY78_16035
03400 DNA repair and recombination proteins [BR:
sphd03400
]
HY78_16035
Enzymes [BR:
sphd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HY78_16035
Messenger RNA biogenesis [BR:
sphd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HY78_16035
DNA repair and recombination proteins [BR:
sphd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HY78_16035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
RQC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ARR54839
LinkDB
All DBs
Position
complement(3325414..3327180)
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AA seq
588 aa
AA seq
DB search
MPTPLEALQQTFGYAHFRGRQADVIDRVMAGLNTLAVMPTGAGKSLTYQIPALCRPGTGL
VVSPLIALMHDQVRSAEAAGIRAAALTSADDNRDETIDRLRSGVLDLLYVAPERVSTEGF
RRLLSQVPLALIAIDEAHCVSEWGHDFRPDYRLLRGLLDTRPDVPRLALTATADHHTRDD
ILAQLGIAPDGLILAGFDRANLRYGITPRDGVARQLARFIEENPGAGIVYAPTRDATERL
AAQLAANGRAARAYHAGLDPAVRAANQKAFVASEDMVMVATVAFGMGIDKPDVRFVAHAG
LPKSIEAYYQETGRAGRDGDPAATQLFWGAEDFARARRRIETDVEESRRPGERQRLNAMA
MLVEAPGCRRAILLRHFGEDPPAQCGNCDNCLNPPTGIDATVVAQKLLSAAFRTDMRFGV
THLSEVLAGKETEKILMLGHNRLSVFGIADEAEQKLIKPVARALLARDALRADEYGGLSF
GPGARPILKGEEQVPLILPPERARRRKSRDGADYPHDPLFDRLRALRRDLAREQGVPPYV
VFNDSTLREMAALRPETLAGLAQISGVGAKKLETYGETFLAAIQSHDG
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgcccactcccctggaagcccttcagcagaccttcggctatgcgcatttccgggggcgg
caggcggacgtgatcgaccgggtgatggccgggctcaacacgctggcggtgatgccgacc
ggcgcgggcaagtcgctgacctaccagattccggcgctgtgccggccgggcaccggcctg
gtggtctcgccgctgatcgcgctgatgcacgaccaggtgcgctcggccgaggccgccggc
atccgcgccgccgcgctcacctccgccgacgacaatcgcgacgagacgatcgaccggctg
cgctcgggcgtactcgacctgctctacgtcgcgccggagcgcgtctcgaccgagggcttc
cgccggctgctgagccaggtgccgctggcgctgatcgcgatcgacgaggcgcattgcgtg
tccgaatggggacacgacttccgccccgactatcgcctgctgcgggggctgctcgatacg
cggcccgacgtgccgcgcctggcgctgaccgccaccgccgaccaccacacgcgcgacgac
atattggcgcagctcggcatcgcccccgacggcctgatcctcgccggcttcgaccgcgcc
aacctgcgctacggcatcaccccgcgcgacggcgtcgccaggcagctcgcccgcttcatc
gaggagaatccgggcgcgggcatcgtctatgccccgacccgcgatgcgaccgagcggctg
gcggcgcagctcgccgcgaacggccgcgccgcgcgcgcctatcatgccgggctcgatccc
gccgtccgcgccgccaatcagaaggcgttcgtcgcgtcggaggacatggtgatggtggcg
acggtcgccttcggcatgggcatcgacaagcccgacgtccgcttcgtcgcccatgcgggg
ctgcccaagtcgatcgaggcctattatcaggagaccggccgcgccggccgcgacggcgac
ccggccgccacccagctgttctggggcgccgaggacttcgcccgcgcccgccgccggatc
gagaccgacgtcgaggaaagccgccggccgggcgagcgccagcggctcaacgcgatggcg
atgctggtcgaggcgccgggctgccgccgcgcgatcctgctgcgccatttcggcgaggac
ccgccggcccagtgcggcaattgcgacaattgcctcaacccgccgaccgggatcgacgcg
accgtcgtcgcgcagaagctgctctccgcggccttccgcaccgacatgcgcttcggcgtc
acccatttgtccgaggtgctggcgggcaaggagaccgagaagatcctgatgctcggccac
aaccggctgtcggtgttcggtatcgccgacgaggccgagcagaagctgatcaagccggtc
gcccgcgcgctgctcgcccgcgacgcgctgcgcgccgacgaatatggcggcctgtccttc
ggccccggcgcccgtccgatcctgaagggcgaggaacaggtgccgctgatcctgcccccc
gagcgggcgcggcggcgcaagtcgcgcgacggcgccgactatccgcacgatccgctgttc
gaccggctgcgcgcgctgcgccgcgatctggcgcgcgagcagggggtgccgccctatgtc
gtgttcaacgattcgaccctgcgcgaaatggccgcgctccggcccgagacgctggctggc
cttgcgcagatttcgggcgtaggggcgaagaaactcgaaacctatggcgagaccttcctc
gccgccattcagagccatgacggctga
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