Rhizorhabdus wittichii DC-6: HY78_19940
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Entry
HY78_19940 CDS
T05200
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HY78_19940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphd03021
]
HY78_19940
03400 DNA repair and recombination proteins [BR:
sphd03400
]
HY78_19940
Enzymes [BR:
sphd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HY78_19940
Transcription machinery [BR:
sphd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HY78_19940
DNA repair and recombination proteins [BR:
sphd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HY78_19940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
RNA_pol_L_2
TmoB
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
ARR55549
LinkDB
All DBs
Position
4176362..4177423
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AA seq
353 aa
AA seq
DB search
MAVNAKNWQELKKPNGLEKKSGGDGKRKATFVAEPLERGFGLTLGNSLRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMQGDGPRRLQLSATGPAEVTAGMI
AASGDIEVMNTDLVICHLDDGATLNMELTADVGKGYVTAAANRPVDAPIGLIPVDALYSP
VRQVAYKVENTRVGQELDYDKLTLTIETDGTVTPEDALAYSARILQDQLQLFVHFDDGMA
ISAPAAGAGAAGGAAGEPEGDANQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQK
TEAEMLRTPNFGRKSLNEIKEVLASMGLRLGMEIPGWPPENIEEMAKKLEQEF
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcaacgcaaagaactggcaggaactcaagaagccgaacggcctcgaaaagaag
tcgggcggcgatggcaagcgcaaggcgaccttcgtcgccgagccgctggagcgcggcttc
ggcctgacgctcggcaactcgctgcgtcgcgtgctgctgtcctcgctgcagggcgccgcc
gtcacctcgatcaagatcgagaacgtgcttcacgagttctcgagcctcgcgggcgttcgc
gaggacgtcaccgacatcgtcctcaacgtcaagcagatcgcgctcaagatgcagggcgac
ggcccccgccgccttcagctctcggcgaccggcccggccgaggtcaccgcgggcatgatc
gccgcttcgggcgacatcgaggtgatgaacaccgacctggtgatctgccacctcgacgac
ggcgcgaccctgaacatggaactgaccgccgacgtcggcaagggctatgtcaccgccgcc
gccaaccgtccggtcgacgcgccgatcggcctgatcccggtcgatgcgctctactcgccg
gtccgccaggtcgcctacaaggtcgagaacacccgcgtcggtcaggagctcgactatgac
aagctcacgctgacgatcgagaccgacggcaccgtcacgccggaagacgcgctggcctat
tcggcgcgcatcctgcaggaccagctccagctcttcgtccacttcgacgacggcatggcg
atctcggctccggccgcgggcgccggcgccgcgggcggcgctgcgggcgagccggaaggc
gacgccaaccagctcaaccgttacctgctcaagaaggtcgacgagctcgagctgtcggtc
cgttcggccaactgcctcaagaacgacaacatcatctacatcggcgacctggtccagaag
accgaggccgagatgctgcgcacgccgaacttcggccgcaagtcgctcaacgagatcaag
gaagtcctcgcttcgatgggcctccgcctgggcatggaaatcccgggctggccgccggag
aacatcgaggaaatggccaagaagctcgaacaggagttctga
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