Rhizorhabdus wittichii DC-6: HY78_20515
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Entry
HY78_20515 CDS
T05200
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd03420
Nucleotide excision repair
sphd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HY78_20515
03430 Mismatch repair
HY78_20515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphd03400
]
HY78_20515
Enzymes [BR:
sphd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HY78_20515
DNA repair and recombination proteins [BR:
sphd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HY78_20515
MMR (mismatch excision repair)
Other MMR factors
HY78_20515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
PcrA_UvrD_tudor
AAA_22
AAA_11
DUF3553
RPN6_N
Motif
Other DBs
NCBI-ProteinID:
ARR55655
LinkDB
All DBs
Position
4293297..4295576
Genome browser
AA seq
759 aa
AA seq
DB search
MTQDAPVPEPAYLRGLNPPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATRRAWP
SEILAVTFTNKAAREMRERVGRLLGQAVEGMPWLGTFHSVAARMLRRHAELVGLTPSFTI
LDTDDQLRLLKQLLAAADLDEKRWPARQLAGLIDRWKNRGLTPAEIDAGEAEQFANGRGG
ELYQQYQDRLRAVNACDFGDLLLHMLTILKTHRDVLADYQQRFRYVMVDEYQDTNSSQYL
WLRLIAQERKNICCVGDDDQSIYSWRGAEVANILRFERDFPGAAVIRLEQNYRSTPHILA
AASGLIAHNGGRLGKTLWTEAAEGEKVRIVGVWDGPEEARRVGDEIEAHERGGGKLDDVA
ILVRAQFQTREFEDRFIAIGMPYRIVGGFRFYERAEIRDALAYLRTISQPADDLAFERIV
NTPKRGLGDKAVAKLHQLARAEGIPLALAAARILGTDELTPQARRALGNLVGDIARWRDL
LSQLSHPELTRQVLEESGYVAMLQNEKSTEAEGRLENLNELARAMEDYATLGDFLEHVSL
VMDNDAEAETAKVTVMTIHAAKGLEFDTVFLPGWEEGVFPSQRSLDEGGLASLEEERRLG
YVAITRARRRCTIIHAANRRIYGQWTSSIPSRFVAELPDQHVEAETTMSGGESLWRAQWS
EHADPFAHVGRSQGRGPGWQRATAAGGLGSPQAGSRVVEARASAVSFAQPPRKDIALGQR
VFHTKFGYGAVAEIEGNKLEIDFEHAGRKRVLDSFVSPA
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
gtgactcaggatgcccccgttcccgaacccgcctatctgcgcggcctcaacccgccgcag
cgcgaggcggtgctcaccaccgaggggccggtgctcgtcctcgccggcgccggcaccggc
aagacggcggcgctgaccgcgcggctggcgcatctcgtcgcgacgcggcgggcctggccg
tccgagatactggccgtcaccttcaccaacaaggcggcgcgcgagatgcgcgagcgggtc
ggccggctgctcggccaggcggtcgaggggatgccgtggctcggcaccttccactcggtc
gccgcgcggatgctgcgccgccatgccgagctggtcggcctcacccccagcttcaccatc
ctcgacaccgacgaccagctccgcctgctcaagcagcttctcgcggccgccgatctcgac
gagaagcgctggcccgcgcgccagctcgccgggctgatcgaccgctggaagaatcgcggc
ctgaccccggcggagatcgacgcgggcgaggccgagcaattcgccaacggccgcggcggc
gagctctaccagcaatatcaggatcggctgcgcgcggtgaacgcctgcgacttcggcgac
ctgctgctccacatgctgaccatattgaagacgcaccgcgacgtgctggccgattatcag
cagcgcttccgctatgtgatggtcgacgaatatcaggacaccaacagttcccaatatctc
tggctccgcctgatcgcgcaggagcgcaagaacatctgctgcgtcggcgacgacgatcag
tcgatctattcgtggcgcggcgccgaggtggcgaacatcctgcgcttcgagcgtgatttc
cccggcgcggcggtgatccggctcgaacagaattaccgatcgaccccgcacatcctggcg
gcggcgagcgggctgatcgcgcataatggcggccggctcggcaagacgctgtggaccgag
gcggccgagggcgagaaggtccgcatcgtcggcgtctgggacggccccgaggaggcgcgc
cgcgtcggcgacgagatcgaggcccacgagcgcggcggcggcaagctcgacgacgtcgcg
atcctggtccgcgcccagttccagacgcgcgagttcgaggaccgcttcatcgcgatcggc
atgccctaccgcatcgtcggcggcttccgcttctacgagcgcgccgagatacgcgacgcg
ctcgcctatctgcggacgatcagccagcccgccgacgacctcgccttcgagcggatcgtc
aacacgcccaagcgcgggctgggcgacaaggcggtcgccaagctccaccagctcgcccgc
gccgaggggattccgctggcgctggccgccgcgcgcatcctcggcaccgacgagctgacc
ccgcaggcgcgccgcgcgctcggcaacctggtcggcgacatcgcccgctggcgcgacctg
ctgtcgcagctgtcgcatcccgaactgacccggcaggtgctggaggagtcgggctatgtc
gcgatgctccagaacgagaagtcgaccgaggccgagggccggctggagaatctcaacgag
ctcgcccgcgcgatggaggattatgcgacgctcggcgacttcctcgaacatgtcagcctg
gtgatggacaacgacgccgaggcggagaccgccaaggtgacggtgatgacgatccacgcc
gccaaggggctggagttcgacacggtgttcctgccgggctgggaggagggcgtcttcccg
tcgcaacggtcgctcgacgagggcgggctcgccagcctcgaggaggaacggcggctcggc
tatgtcgccatcacgcgggcgcggcggcgctgcacgatcatccacgccgccaaccgccgc
atctacggccagtggacctcgtcgatcccgtcgcgcttcgtcgccgagctgcccgaccag
catgtcgaggccgagacgaccatgtcgggcggcgaatcgctgtggcgcgcgcaatggtcc
gaacatgccgatcccttcgcccatgtcggtcggtcgcagggacggggccccggctggcag
cgtgccaccgcggcgggcggcctcggcagcccgcaggcggggtcgcgcgtggtcgaagcg
cgcgcctcggcagtcagcttcgcgcagccgccgcgcaaggacatcgcgctcggccagcgc
gtcttccacaccaagttcggctatggcgcggtggccgagatcgagggcaacaagctcgag
atcgacttcgagcatgccggccgcaagcgggtgctcgacagcttcgtcagcccggcctga
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