Rhizorhabdus wittichii DC-6: HY78_23445
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Entry
HY78_23445 CDS
T05200
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sphd03009
]
HY78_23445
Enzymes [BR:
sphd01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
HY78_23445
Ribosome biogenesis [BR:
sphd03009
]
Prokaryotic type
ribosomal protein modification factors
HY78_23445
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
YscW
Motif
Other DBs
NCBI-ProteinID:
ARR56197
LinkDB
All DBs
Position
complement(4972053..4973396)
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AA seq
447 aa
AA seq
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MAIELPSPPKIGMVSLGCPKNLVDSERILTKLRSDGYGLSPDYAGADVVLVNTCGFLDSA
KEESLEAIGEAIAENGRVIVTGCMGDEAEAIRARFPKVLAITGAHQYEEVVGAVHDAAPV
PPSPYVDLVPEAGLKLTPRHYSYLKISEGCNHRCSFCIIPSIRGDLVSRRPDAILREAEK
LVAAGTRELLVISQDTSAYGLDLRHKAFPLKGGGEVRAHMTDLARELGKLGAWVRLHYVY
PYPHVDHVIPLMAEGLITPYLDIPFQHASPPVLKAMKRPANEAKVLERIAGWRAICPDIA
IRSTFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVAGAPANDLPGAVPEEVKEER
YARIMAKTAAISAAKLAAKVGRTLDVIIDAVDDEGGATGRSQADAPEIDGEVHLRDAGGL
EPGAIVAVEIEDADEHDLFGVPVAAAR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcgaactcccctccccgccgaagatcggcatggtttcgcttggctgtcccaag
aacctggtcgacagcgaacgcatcctgaccaagctgcggtcggacggctacggcctgtcg
cccgactatgccggcgccgacgtcgtcctcgtcaacacctgcggcttcctcgacagcgcc
aaggaggagagcctggaggcgatcggcgaggcgattgccgagaatggccgggtcatcgtc
accggctgcatgggcgacgaggcggaggcgatccgcgcgcgcttccccaaggtgctcgcg
atcaccggcgcgcaccaatatgaggaggtggtcggcgcggtccacgacgcggcgccggtc
ccgccttcgccctatgtcgacctggtgcccgaggcggggctcaagctcaccccgcgccac
tacagctatctgaagatctccgagggctgcaatcaccggtgcagcttctgcatcatcccg
tcgatccgcggcgacctggtcagccgccggcccgacgcgatcctgcgcgaggcggagaag
ctggtcgcggcgggcacgcgcgagttgctcgtgatcagccaggacacctcggcctacggc
ctcgacctcaggcacaaagccttcccgctgaagggcggcggcgaggtccgcgcgcacatg
accgacctcgcccgcgaactgggcaagctcggcgcctgggtgcggctccattatgtctac
ccctatccgcatgtcgaccatgtcatcccgctgatggccgaggggctgatcaccccctat
ctcgacatcccgttccagcatgccagcccgccggtgctgaaggcgatgaagcgcccggcc
aacgaggcgaaggtgctcgaacggatcgccggctggcgcgcgatctgccccgacatcgcg
atccggtcgaccttcgtggtcggcttccccggcgagaccgaggcggatttccaatatctg
ctcgactggctcgacgaggcgcagctcgaccgggtcggcgccttccgcttcgagccggtg
gccggcgcccccgccaacgacctgcccggcgcggtgcccgaagaggtcaaggaggagcgc
tacgcccggatcatggcgaagaccgccgcgatctcggccgccaagctcgccgccaaggtc
ggccggacgctcgacgtgatcatcgacgcggtcgacgatgagggcggcgccaccggccga
tcgcaggccgacgcgcccgagatcgacggcgaggtccatctgcgcgacgcgggcgggctc
gaacccggcgccatcgtcgcggtcgagatcgaggatgccgacgagcatgacctgttcggc
gtcccggtggctgcggcgcgttag
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