Rhizorhabdus wittichii DC-6: HY78_26735
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Entry
HY78_26735 CDS
T05200
Name
(GenBank) AMP-dependent synthetase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd00061
Fatty acid biosynthesis
sphd00071
Fatty acid degradation
sphd01100
Metabolic pathways
sphd01212
Fatty acid metabolism
sphd02024
Quorum sensing
sphd04146
Peroxisome
Module
sphd_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
HY78_26735
00071 Fatty acid degradation
HY78_26735
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
HY78_26735
09145 Cellular community - prokaryotes
02024 Quorum sensing
HY78_26735
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sphd01004
]
HY78_26735
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sphd04147
]
HY78_26735
Enzymes [BR:
sphd01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
HY78_26735
Lipid biosynthesis proteins [BR:
sphd01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
HY78_26735
Exosome [BR:
sphd04147
]
Exosomal proteins
Exosomal proteins of breast milk
HY78_26735
Exosomal proteins of breast cancer cells
HY78_26735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ARR56782
LinkDB
All DBs
Position
complement(5673668..5675146)
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AA seq
492 aa
AA seq
DB search
MTPVVIVGDRVRTRDEEIERGARLAAAMRAAGVGAGDAVALLLRNDFAVLEANLAVRRLD
AYGVPVNWHWHADEIGYVLRDCAPRLLIGHRDLLEAIEDRIPAGLTVVAIGGDPARGWID
HDGWIAGHEPHAGSGTGLGSSMVYTSGTTGLPKAVRRLPASGEESAQRARVLAMIHDSAP
GNVALVTGPLYHLFGQALMTATFGAGGSVVIMERFDPEACLALIERHRVTHSALVPTLFV
RLLRLPDAVKARYDLSSLRHVVHSGAPCAPEVKRAMLGWWGPVLHETYGSTETGVVTKIG
PAEWLERPGSVGRPVLTGEVRIRGEDGGWAPAGTVGDVYLRIHGTPDFTFHGDPAKRAAV
EHDGLVTCGDIGWLDAQGYLFLCDRRVDMLISGGVNIYPAEIEAALLEHRAIGDCAVFGV
PDPEYGEAPVAYVQPAGVIDAGAVRAFLRGRLAGYKVPRHIVLTDALPREETGKIMKRKL
REQFLAAERVDG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgacgccggtcgtcatcgtcggcgaccgggtccgcacccgcgacgaggagatcgagcgc
ggcgcgcggctcgcggcggcgatgcgcgcggcgggggtgggagcgggcgacgcggtcgcg
ctgctgctccgcaacgacttcgcggtgctggaggccaatctcgcggtgcggcggctcgac
gcctatggcgtgccggtcaactggcactggcatgccgacgagatcggctatgtcctgcgc
gattgcgcgccgcggctgctgatcggccaccgcgacctgctggaagcgatcgaggaccgt
atcccggccgggctgaccgtcgtcgcgatcggcggcgatccggcgcggggctggatcgac
catgacggctggatcgccggccatgagccgcatgccggcagcggcaccggcctgggctcg
tcgatggtctacacctcggggacgaccgggctgcccaaggcggtgcggcggctgcccgcc
tcgggcgaggaatcggcgcagcgcgcgcgggtgctggcgatgatccacgacagcgcgccc
ggcaatgtcgcgctggtcacagggccgctctaccatctgttcggccaggcgctgatgacc
gccaccttcggcgcgggcggatcggtggtgatcatggagcgcttcgacccggaagcctgc
ctggcgctgatcgagcgccaccgcgtcacccacagcgcgctggtgccgactttgttcgtc
cggctgctgcgcctgcccgacgcggtgaaggcccgctacgacctgtcgagcctgcgtcac
gtcgtccattcgggggcgccctgcgcgcccgaggtgaagcgggcgatgctcggctggtgg
gggccggtgctgcacgagacctatggatcgaccgagaccggcgtcgtcaccaagatcggc
cccgccgaatggctcgaacgtccgggcagcgtcggccgcccggtgctgaccggcgaggtg
cgcatccgcggcgaggacggcggctgggcgccggcgggcacggtcggcgacgtctatctg
cgcatccacggcacccccgacttcaccttccacggcgatcccgccaagcgcgcggcggtc
gagcatgacgggctggtcacatgcggcgacatcggctggctcgacgcgcagggctatctc
ttcctgtgcgatcgccgcgtcgacatgctgatctcgggcggggtcaacatctacccggcc
gagatcgaggcggcgctgctcgaacatcgggcgatcggcgactgcgcggtgttcggcgtc
cccgaccccgaatatggcgaggcgccggtcgcctatgtccagcccgccggcgtgatcgac
gccggggcggtgcgcgccttcctgcgcggccggctcgcgggctacaaggtgccgcgccac
atcgtcctcaccgatgcgctgccgcgcgaggagaccggcaagatcatgaagcgcaagctg
cgcgagcaattcctggcggcggagcgcgtcgatggctga
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