Sphingobacterium zhuxiongii: GFH32_00635
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Entry
GFH32_00635 CDS
T06292
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphe
Sphingobacterium zhuxiongii
Pathway
sphe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFH32_00635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphe03019
]
GFH32_00635
Enzymes [BR:
sphe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GFH32_00635
Messenger RNA biogenesis [BR:
sphe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GFH32_00635
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
AAA_22
SUa-2TM
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QGA24913
UniProt:
A0A5Q0Q618
LinkDB
All DBs
Position
122342..123460
Genome browser
AA seq
372 aa
AA seq
DB search
MDFKNIGIIAPILKAIAELGHTSPTEIQKQSIPPVLSGKDIIGCAQTGTGKTGAFSIPML
QLLSSEQNKGKHPRALVLAPTRELALQIAQNIKGYSKHLPIEYAVIYGGVKQGKQVAQLR
KGVDIIIATPGRLLDLLNQGIVNLSSVQKLVLDEADNMLDMGFINDIKKILKLIPSKRQT
LLFSATMPKAIRKFANEILNQPVEINVTPETFTAEKVSQSVYFIDKGQKVKLLTRMLLDG
KNTQTLVFMRTKHGADRLSKSIGKSGIQSACIHGNKSQNARENALLSFKNGKINVLIATD
IAARGIDIKELPQVINYDLPADSETYVHRIGRTGRAGKEGKAVSFCSDDEKPMLLKIQKL
IGFSVPVAQKIK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggattttaaaaacatcgggattatagcgcccattttaaaagctatcgcagagttgggg
catacgtctcctaccgaaatacaaaaacaatctatccctccagtcctttcaggcaaggat
atcattggttgtgcgcaaacaggaacaggtaagacgggagctttttcaatcccgatgttg
caattactatcttcagaacaaaataaaggtaaacatccaagggccttagtattggctcct
acccgagaattggccttacagatcgctcaaaatatcaaagggtacagtaaacatcttccg
attgaatatgcagttatttatgggggtgttaagcaagggaaacaagtagcgcagcttcgc
aagggtgtggatattatcatcgcaactccaggaagattgttggaccttttaaaccaagga
attgtaaatttaagttcagttcaaaagttggtgctagatgaagcagacaatatgcttgat
atgggctttatcaacgatattaaaaagatacttaaactcattccgagtaaaaggcaaacg
ctgttgttttccgcaacaatgcctaaagctattcgaaaattcgccaatgaaattctgaat
caacccgtggagatcaatgttactccggaaacattcactgctgaaaaagtaagccaatct
gtttattttatcgataagggtcaaaaagtaaagctattgactagaatgttactcgatggg
aaaaatacacaaacgctggtgtttatgcggacaaaacatggtgctgatcgtctatcaaag
tctattgggaaaagtggaatccaatcggcatgtattcatggtaacaagtctcaaaatgct
cgtgagaacgctctattatcgtttaagaatggcaagattaacgttcttattgcgacagat
attgcagcacgtggtattgacatcaaagaacttccacaagttattaactatgatttacca
gcagactccgagacttatgttcatcggattggccgaacgggacgtgcaggaaaagaaggt
aaagcggtctcattctgtagcgatgacgaaaaacctatgctattaaaaatccaaaagcta
ataggcttttcggttccagtagcgcaaaaaatcaaataa
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