Sphingobacterium zhuxiongii: GFH32_02220
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Entry
GFH32_02220 CDS
T06292
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sphe
Sphingobacterium zhuxiongii
Pathway
sphe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFH32_02220 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphe03019
]
GFH32_02220 (pnp)
03016 Transfer RNA biogenesis [BR:
sphe03016
]
GFH32_02220 (pnp)
Enzymes [BR:
sphe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GFH32_02220 (pnp)
Messenger RNA biogenesis [BR:
sphe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GFH32_02220 (pnp)
Transfer RNA biogenesis [BR:
sphe03016
]
Prokaryotic type
tRNA degradation factors
GFH32_02220 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QGA25202
UniProt:
A0A5Q0QCA5
LinkDB
All DBs
Position
518111..520294
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AA seq
727 aa
AA seq
DB search
MSYNEKKVTIEMGGGLAPIELSTGKLAKQADGSVVLKQGNTMLLATVVSAREAKTGVDFL
PLSVDYQEKYASTGRIPGGFLRREARLSDYEVLISRLIDRALRPLFPDTYHADTQVMVSL
ISADKEIMPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVVNPTVSALANASLEF
IVAGSAQDIVMVEGEAKEISETEMVEAIAFAHEAIKKQVAGQIELAKLVGAEVKREFVHE
PSNPELKEAVYAATYAQVYEVAKSGSTKHERSERFAEIGKEFFATQGEEIDDDTAFLLKK
YYHDVQYDAVRNLVLDEGIRLDGRTVRTVRPIWSEVDYLPAAHGSAVFTRGETQSLTSVT
LGSKDDEQMIDGAFFHGYNKFILHYNFPGFSTGEVRPNRGPGRREVGHGNLAMRSLKQVL
PTGEDNPYTIRIVSDILESNGSSSMATVCAGTLALMDAGVKIAAPVSGIAMGLITDEKTG
KYAILSDILGDEDHLGDMDFKVTGTQKGIVGCQMDLKINGLKWEVLTQALDQAKEARLHI
LGEMDKTIQAPREDYKAHAPRIIQISIEKEFIGAVIGPGGKVIQEIQRETGATISIEEVD
NKGIVQFFAENKDSIDAAMARVKQIVTKPEIGEVYEGKVKSIMAFGAFVEIMPGKDGLLH
ISEIDWKRLETMDGVFKEGDIVTVKLLDIDKQGKMKLSRKALLPRPPREDKPKQEEKPAN
DAAAPQA
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgagttataacgaaaagaaagtaacgattgagatgggtggcggactagcgcctatcgaa
ttgtctactgggaaattagccaaacaagctgatggatctgtagtattgaaacaagggaac
acgatgttattagcaactgttgtttctgcaagagaagccaaaacaggtgttgattttctc
ccattatccgtagactaccaagaaaaatatgcttcgacaggccgtatcccaggaggcttt
ttacgtcgcgaagcgagactttcagattatgaagtcttaatttccagattaatagacaga
gctttacgcccattattcccagatacttaccatgcagacacacaagttatggtgagctta
atttctgcggataaggaaattatgcctgatgcattagcaggattagcggcttctgctgcg
attgctgtttctgatattccatttaacggccctatttcggaggttcgtgtagctaaaatc
gatggtcaattagttgttaaccctacagtttctgcattagcgaatgctagcttagaattt
atcgtagcgggttctgcacaagacatcgtcatggtagaaggtgaagcaaaagagatttca
gaaactgaaatggttgaggcgattgcttttgcacatgaggcaattaaaaagcaagttgct
ggacagatagaattagcaaaattagtaggtgctgaagtaaaacgtgaatttgttcacgag
ccttcaaatcctgaattaaaagaggcagtatatgctgcaacatacgctcaagtatacgaa
gtagcaaaatcaggttcaacgaagcatgaacgttctgagcgtttcgctgaaattggaaaa
gagttttttgcaacgcaaggtgaagagattgatgacgatacagcattcttattgaaaaaa
tattaccatgatgttcaatatgatgcggttcgtaatctagtgttggatgaaggaattcgt
ttagatggccgtacagttcgtacagtacgtcctatttggtcagaagtggattatttgcca
gctgcacacggttcagcagtatttacacgtggtgagacacaatcattaacatctgttact
ttaggttctaaagacgatgagcaaatgatcgatggagcattcttccacgggtataacaag
tttatcttacactataacttcccaggtttctctacaggcgaagtaagacctaacagaggt
cctggtcgtcgtgaagtaggtcatggtaacttagcaatgcgttcattgaaacaagtattg
cctactggtgaagacaatccatatacaatccgtattgtttcagatatcttagaatctaac
ggttcttcgtcgatggcaacagtatgtgctggtacattagctttaatggatgcaggtgtt
aagattgctgcgccagtatcaggtattgcaatgggattgattacagacgagaaaactggt
aaatacgctatcttatccgatatcttaggtgacgaagatcatttaggtgacatggacttt
aaagttacaggtacacaaaaaggtatcgttggttgtcaaatggacttaaaaattaacggt
ttgaaatgggaagtattaacccaagctttagaccaagcgaaagaagctcgtttacacatc
ttaggagagatggataaaacaattcaagcgcctcgcgaagattataaggcacatgcgcca
cgcattatccaaatttctatcgagaaggaattcattggtgctgtaattggaccaggtggt
aaagtaatccaagagattcaacgtgaaacaggtgctactatttccattgaagaagttgat
aacaaaggtatcgttcaattcttcgctgaaaataaagattctatcgatgctgcaatggca
cgtgtaaaacaaatcgttacgaaacctgaaattggtgaagtttacgaaggtaaagtgaag
tctattatggctttcggtgctttcgtggagattatgccaggaaaagatggtttattacat
atctctgagattgattggaaacgtctagaaactatggacggagtattcaaagagggtgat
attgtaaccgtaaaactgttagatattgataagcaaggtaaaatgaaactttctcgtaaa
gctttattgcctcgcccgccaagagaagataagccaaaacaagaggaaaaaccagcgaat
gatgctgctgcccctcaggcataa
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