Sphingobacterium zhuxiongii: GFH32_06680
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Entry
GFH32_06680 CDS
T06292
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sphe
Sphingobacterium zhuxiongii
Pathway
sphe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFH32_06680 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphe03019
]
GFH32_06680 (rny)
Messenger RNA biogenesis [BR:
sphe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GFH32_06680 (rny)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
DUF4407
UPF0154
PFF1_TM
Motif
Other DBs
NCBI-ProteinID:
QGA26020
UniProt:
A0A5Q0QFN8
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Position
1552305..1553864
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AA seq
519 aa
AA seq
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MELSTTISIIISLVVGVFIGRYLLQMLFKKQEQSANDKAAQIIKDAEQQGEHSKKQRQLE
AKEKFLQLKAEHEKEVNQRNNAISQKENTVRQKEQSMNQKLENLNREKQELDGKSKKLEQ
LVELNEKKKEEVELLKGQHIKQLESIAGLSADEAKEQLVNSLREEARSQAIIQIKDIVDE
AKLTASKEAKKVVIQTIQRTATEAAIENTVSIFNIENDEIKGRIIGREGRNIRALEAATG
VEIIVDDTPEAIILSGFDPVRREIARLSLHRLVTDGRIHPARIEEVVAKTRTQIEDEIVE
IGERTVIDLGIHGLHPELIRMVGRMRYRSSYGQNLLQHSREVANFAATMASELGLNVKHA
KRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPDVCNAIGAHHDEIEMTSMISPIVQ
ACDAISGARPGARREVVESYIKRLKELEDLALSYPGVEKTFAIQAGRELRVVVESEKVSD
AQAEILAADISNRIQTEMTYPGQIKVTVIRETRSVSYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagttatcaactactatatcaataataatatcacttgttgtaggtgtgtttattgga
cgatatttgttgcagatgcttttcaaaaagcaggagcaatccgctaatgataaggctgca
caaattatcaaagatgcagaacaacaaggtgaacatagcaaaaagcaacgtcaattagag
gcaaaagaaaagtttttacagttgaaggccgaacatgaaaaagaggtaaatcaacgtaat
aatgccatttcacaaaaagagaatacagttcgtcagaaggaacaatccatgaaccaaaaa
ctggagaacttaaatcgtgagaagcaggaattggatggcaaatctaagaaattagagcag
ttagtggagctgaatgagaaaaagaaagaagaagtagaactgttaaaaggtcagcatatc
aagcaattggaaagtattgcaggcttgtcagctgatgaagcgaaagaacaattagtaaac
tcattacgtgaggaagcacgttctcaagcaataattcaaattaaagacatcgttgatgag
gcaaagttaactgcatcaaaagaagcgaagaaagttgtaatccaaacgattcaacgtaca
gcaactgaggcagcgatagaaaacacagtttcaatatttaatattgagaatgatgagatt
aaaggacgtattatcggtcgtgaaggtcgtaatattcgtgcgttagaagcagctacggga
gttgaaattattgttgatgatacgcctgaagcgatcatcttatctggttttgatcctgtt
cgtcgtgaaattgcacgtttatctcttcacagattggtgacggatggtcgtatccaccct
gctcgtattgaagaggtggtagcgaagacgcgtacgcagattgaagatgagattgttgag
attggagagcgtacagtaattgacttaggtatccatggcttacatcctgaattgattcgt
atggttggtagaatgcgttatcgttcgtcatacggtcaaaaccttttacagcactctcgt
gaggtggcaaacttcgcagcgacaatggcttctgaattaggcttaaatgttaaacatgcg
aagcgtgcaggtcttttacatgatattggtaaagtacccgatgataatccagaattacct
cacgctatccttggtatgcaattagctgagaaatataaggagcatccagatgtgtgtaat
gcgatcggagcgcatcacgatgagatcgaaatgacttctatgatttcacctattgttcaa
gcatgtgacgcgatctctggggctcgtcctggagctcgtcgtgaagtggtagagagctat
atcaaacgcctgaaagaattggaagatttggcgctttcgtaccctggtgtagagaagaca
tttgcaatccaagctggacgtgaactacgtgtggttgtagaaagtgaaaaagtttctgat
gcgcaagcggaaatcttagctgcagatatttcgaatagaattcaaacagagatgacttat
ccaggtcagattaaagttactgtaattcgtgagacacgttctgtgtcttatgcgaaatag
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