Sphingobacterium zhuxiongii: GFH32_12945
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Entry
GFH32_12945 CDS
T06292
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sphe
Sphingobacterium zhuxiongii
Pathway
sphe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFH32_12945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphe03019
]
GFH32_12945
03009 Ribosome biogenesis [BR:
sphe03009
]
GFH32_12945
Enzymes [BR:
sphe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GFH32_12945
Messenger RNA biogenesis [BR:
sphe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GFH32_12945
Ribosome biogenesis [BR:
sphe03009
]
Prokaryotic type
rRNA helicases
GFH32_12945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UTP25_NTPase-like
CMS1
SNF2-rel_dom
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QGA27167
UniProt:
A0A5Q0QAL6
LinkDB
All DBs
Position
3076564..3078357
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AA seq
597 aa
AA seq
DB search
MNPFLELGIRHEIVNAITELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP
LLEQLDFSFNHPQALVLCPTRELCLQIAKDLEKYAKNLDNVNVVAVYGGANIGDQLRQIR
RGVQIVVATPGRMLDIIGRNAIDFSKVKYVVLDEADEMLNMGFQEDINNILSETPSDKKT
WLFSATMPREVRRIAQKYMTDPFELTVGTKNTGNENIEHQYFLIKAKDKYAAFKRIVDFY
PEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERNLQLLIATD
VAARGIDVNDVTHVINYSLPDEVENYTHRSGRTARAGKTGISISLINVKEMSKIRHIEKI
IGKSFERKQVPQGTEVCEKQLFALVDKVHNVEVHEEQINTFLPQILESLQDLTKEEVVKR
FASLEFNRFLNYYKEAPDLNIEARESSRGDRDGDREGGRRSSKGFTRLFINLGSVDEFTR
GEMLGFICNNSKISGKSIGKIDLKGVFTFFEVEDAEVNKVFQGFEGVNYNGRGVRIEVSG
EGRSDRGSSNGRGRSGRSSDRNSGGGRGGDRRDRGRSNGGGGFRDFSGKRKESKSRY
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatttttagaactggggatccgtcatgagattgttaatgccatcactgagtta
ggtttcgaaaaaccttctcccatccaggaaaaagccattcctgtgttactgactggtaac
gacgattttgtcggattagcccaaacaggtactggaaagactgcggcatttggtcttcct
ctattagaacaactagacttttctttcaatcaccctcaagcattggtactttgtccgacg
cgtgagctatgtttgcaaatcgcaaaagacctagaaaagtatgccaaaaatttagacaat
gttaatgtagttgccgtttacggtggtgctaacattggcgaccaattacgtcagatccgt
cgtggagtacagatcgtcgtagcaacacctggtcgtatgcttgatatcatcggtcgtaat
gcgattgacttctcgaaagtgaagtatgttgtattagacgaggctgatgagatgttgaac
atgggtttccaagaagacatcaataatattttatcagaaactccatctgataagaaaaca
tggttattctcagcgactatgcctcgtgaggttcgtcgtattgctcaaaaatacatgacc
gacccgttcgagttgactgtaggcacgaagaatactggtaatgaaaacatcgaacaccaa
tactttttaattaaagcaaaagataaatacgctgctttcaaacgtatcgtagatttttat
ccagagatctttggtattgtattctgtcgtacaaagattgaaacacaagagattgctgaa
gcattaattaaagacggttacaacgctgactctttacacggagacctttcacaacaacaa
cgtgataaggtaatgaaacgctatcgtgagcgcaacttgcaattattaattgctactgac
gttgctgcacgtggtattgacgtgaatgatgttacgcacgtaattaactattctcttcct
gacgaagtagaaaactatacgcaccgttcaggtcgtacagctcgcgctggtaaaacaggt
atctcaatttcattaatcaatgtgaaagagatgagcaaaattcgtcatattgagaaaatc
attggtaaatctttcgaacgtaaacaagttccacaaggaaccgaagtttgtgagaaacaa
ttgtttgccttagtagacaaagtacacaatgtagaagtacatgaagaacaaatcaacaca
ttccttcctcaaatcttagaaagtcttcaagacttaactaaagaagaagtagtgaaaaga
tttgcttccttagaatttaatagattcttaaattattacaaagaagcaccagatttgaat
atcgaagcacgtgaatcttctagaggagatcgtgatggagatagagaaggcggacgtcgt
tcatctaaaggatttactcgtttgtttatcaacttaggttcggtagacgagttcacccgc
ggtgagatgctaggctttatttgtaacaacagtaaaatctctggaaaatcaattggtaaa
attgaccttaaaggtgtattcactttctttgaagtggaagacgctgaagtcaataaagta
ttccaaggttttgaaggcgttaattacaatggtagaggtgtacgtattgaagtatctggt
gaaggtagatctgatagaggatcttcaaacggccgtggccgctcaggcagatcttctgac
agaaactctggcggaggacgcggtggagacagaagagatcgtggtagatcgaacggcgga
ggtggtttccgcgacttctctggaaaacgcaaagaatctaaaagtagatattaa
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