Sphingobacterium zhuxiongii: GFH32_16405
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Entry
GFH32_16405 CDS
T06292
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sphe
Sphingobacterium zhuxiongii
Brite
KEGG Orthology (KO) [BR:
sphe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sphe03009
]
GFH32_16405 (rlmD)
Enzymes [BR:
sphe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GFH32_16405 (rlmD)
Ribosome biogenesis [BR:
sphe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GFH32_16405 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
Methyltransf_25
MTS
TRAM
Cons_hypoth95
PrmA
N6_Mtase
N6_N4_Mtase
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
QGA27804
UniProt:
A0A5Q0QET8
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All DBs
Position
complement(3888377..3889786)
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AA seq
469 aa
AA seq
DB search
MGRRIAQDKKFISDLSIIDIAEEGKGVAKQDNLVYFIERAVPGDVVDVELMRKKKSFVEG
RVTAIKQASEYRVDPFCSHFGVCGGCKWQHMTYDAQLKFKEQYVGNALSRIGKVDVSDME
PILASEQTSYYRNKLEYTFSNKRWLTDLDDVQPGDSMDALGFHVPGRFDKILTVDHCYLQ
QDPSNDLRNSIFEFAKANEISFYDLKQHEGALRNLIIRTSSTGELMVIVVFAYPEEEQVD
LLMKFIQDKFPSITSLQYIINQKRNDTIFDQDIEVFSGRDFIYEEMEGLKFKVGPKSFYQ
TNSRQAYELYKITREFADLQGDELVYDLYTGAGTIANFVAKTAREVVGVEYVPTAIEDAK
VNSQINGIVNTKFFAGDMKDVLTSDFVKEHGKPDVVITDPPRAGMHADVVERILEMESEK
VVYVSCNAATQARDLEMLQSKYEVSRIKPVDMFPHTQHVENVVLLKLRK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaagaatcgctcaagataaaaagtttatatccgatctgtcaattattgatatt
gcagaagagggaaaaggtgtagctaagcaagataatttagtttattttattgagcgcgct
gtgccaggggatgtggttgacgtggagttaatgcgcaagaagaagagttttgtagaaggg
cgtgttactgcaattaagcaagcgtcggaatatcgcgtagatcccttttgttctcatttt
ggagtatgtggaggttgtaaatggcaacatatgacctatgatgcacagctgaagtttaag
gaacaatatgttggtaatgcactttcccgtataggtaaagttgatgtctccgatatggag
ccaattttagcttcagaacaaactagttactatcgtaataaattagagtatactttttct
aataagcgttggttaacagatcttgacgatgtgcaacccggtgattccatggatgcccta
gggttccatgtgccaggacgcttcgacaagattttgacagttgatcattgctatcttcaa
caagatccttcaaatgatttacgtaattcgatttttgaatttgcgaaggcgaatgagatc
tcattctatgacctaaaacaacatgaaggcgccctaagaaatctaattatccgaacttct
tctactggagaattgatggtaattgttgtttttgcttatcctgaagaagaacaggttgat
ttattaatgaaatttattcaagataaattcccgagtattacttctttacaatatataatc
aatcaaaaacgaaacgacactatttttgaccaggatattgaggttttctcgggtcgtgat
tttatatatgaagagatggaaggcttaaaatttaaagtaggtcctaagtctttttatcaa
acgaattcacgtcaagcttatgagttgtataagattacacgtgaatttgctgatttacaa
ggtgatgagttggtttatgacttatatactggtgcaggaacaattgcaaatttcgttgcg
aagactgctagagaagttgttggagtcgagtatgtgccaacagcaatcgaagatgctaag
gttaactcgcagattaacggtattgttaatacaaagttttttgccggtgatatgaaggat
gttttgacgagtgattttgttaaagaacatggaaaacctgacgttgtaatcacggatcct
ccacgtgcaggcatgcacgctgatgttgtagagcgtatattggaaatggaaagtgaaaaa
gttgtctacgtgagttgtaatgctgcaacgcaggcacgcgaccttgaaatgttgcaaagc
aagtatgaagtttctcgtatcaaacctgtggatatgtttccgcatacgcaacacgtagaa
aatgtggtcttattaaagctaagaaaataa
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