Sphingobacterium zhuxiongii: GFH32_16525
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Entry
GFH32_16525 CDS
T06292
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sphe
Sphingobacterium zhuxiongii
Brite
KEGG Orthology (KO) [BR:
sphe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphe03016
]
GFH32_16525
Enzymes [BR:
sphe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GFH32_16525
Transfer RNA biogenesis [BR:
sphe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GFH32_16525
Prokaryotic type
tRNA splicing ligases
GFH32_16525
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QGA27828
UniProt:
A0A5Q0QI07
LinkDB
All DBs
Position
complement(3915071..3916492)
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AA seq
473 aa
AA seq
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MENKRINGYDLIELGFPENISLGIALQINKQRLGFSREEMLAKYKAVLENPAEFMTDNIF
KPLAEFLQNMAAQSEELIALKDSNDAYVVFGEEHIEQGARDQMNTAMRLPVAVAGALMPD
AHQGYGLPIGGVLATRNAVIPYGVGVDIGCRMALSIFDIPESYLLTHHDVLKQILMDNTK
FGAGHGFLKNERSNHSVLDHAAFTENTFVSTLKDKAWTQLGSSGGGNHFVEFGIMEFDQG
DADLAIEKGRYLALLTHSGSRGLGATIADHYTKVAMDNCKLPYMARHLAYLDLDSQAGQE
YWLAMNLAGDYASACHEIIHEKIRKAVGAELLAKIENHHNFAWKEKWNNQEVIVHRKGAT
PASKGTLGIIPGSMATPGFLVRGKGEEASINSASHGAGRLMSRTKAVKTLNKYDLKAMLS
DHGVTLLGAGMDEAPMAYKDIHTVMEAQRDLVDTIATFHPKIVRMADDGSKED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataagagaataaatggatatgatttgattgaattagggtttcccgaaaacatt
tcgttagggattgcactacagatcaacaagcagcgattaggtttctcaagagaggaaatg
ttggctaagtataaagcggttttagaaaatcccgcggaattcatgacggacaatatattt
aaaccgcttgcggaattcttacaaaatatggcagctcaaagcgaagagctaattgcattg
aaagatagcaatgacgcatacgttgtgtttggtgaggagcatattgaacaaggagcaagg
gatcaaatgaatacagccatgcgtcttcctgtagctgttgctggcgccttaatgcctgat
gcacatcaagggtatggattaccaattggtggtgtgctagcgactcggaacgctgttatt
ccttacggtgtaggagtagatattggatgccgtatggctttatctatttttgatatacct
gagtcttatttgttaacccatcatgatgtgcttaaacaaatattgatggataacacaaaa
tttggtgcaggtcatggtttcttgaaaaatgaaagatcgaatcatagcgttttggatcat
gcagcttttacagagaatacgtttgtttctactttgaaagataaagcatggacccaattg
ggatcttctgggggagggaatcacttcgtagagtttggaattatggaatttgatcaggga
gacgcagatctcgctattgaaaaaggaagatatcttgctttgcttacacattccggctca
cgtggccttggtgcaacaattgcagaccattatactaaagttgctatggataattgtaag
ttgccttatatggctcgccatcttgcttatttagatttagattcgcaggcaggacaagag
tattggttggcgatgaacttagcgggagactatgcgtcagcctgtcatgagattattcat
gaaaagatcagaaaagcggtaggcgcagaattgttagcgaaaattgaaaatcatcataat
ttcgcttggaaggaaaaatggaacaatcaagaagttattgtccatagaaaaggtgctacg
ccagcttcgaaggggacattgggtattatcccaggttcaatggcgactcctggattctta
gttagaggaaaaggagaggaggcatcaattaattcggcttcgcatggcgctggacgattg
atgagccgaacaaaagctgtcaaaactcttaataagtacgatttgaaagctatgctttct
gatcatggggttactttattgggcgctggaatggatgaggctccaatggcatataaggat
attcataccgttatggaagcacaacgtgatttagtagatacaattgctacatttcatcct
aaaattgtacgaatggcagatgacggttctaaagaagattag
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