Sphingobacterium zhuxiongii: GFH32_16605
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Entry
GFH32_16605 CDS
T06292
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphe
Sphingobacterium zhuxiongii
Pathway
sphe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sphe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GFH32_16605 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphe03400
]
GFH32_16605 (mfd)
Enzymes [BR:
sphe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GFH32_16605 (mfd)
DNA repair and recombination proteins [BR:
sphe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GFH32_16605 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
GnHR_trans
Motif
Other DBs
NCBI-ProteinID:
QGA27843
UniProt:
A0A5Q0QE83
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All DBs
Position
3935952..3939287
Genome browser
AA seq
1111 aa
AA seq
DB search
MNVQDLLEKYRQSEQVNSLKERIQARNPKIQLKGLIGSSDAMLAAALYTEEKRMNVFILP
NHEDASFFLSDLESLFDKQILFFPSSYKKAFDISLLDSAHVLQRAETLSSLNHNSELPRI
VVTYPDAICEKVINKQDLEKNTLEITQNIKLSIDFINEFLYEYDFERVDFVYEPGQFAIR
GGIVDIFSFSNDLPYRIEFFGDEIESIRTFDIESQLSVSKIHTVTIVPNVQAKFLSANHI
SLLEYIDKNALVWIKDVQYTLEIIKEGYSNSSKFWKALSEQDLKRNPDWIDPRFTFTDEK
NFAAMLFEFAVIEFGKQFYYKPDLTLSFDIHPQPSFNKDFNLLIHNFHENEKHAIKNLIF
SDSTKQIERIYAILDDLDKSITFTPIYKALREGFRDDERKLACYTDHQIFDRYYKYKRRK
GYERSQAITLKELSELKPGDYITHIDHGVGKYAGLEKVDVNGKTQEMIRLMYADSDLLYV
NINSLNRISKYSGKEGTVPKMNKLGTDTWEKLKKTTKKKVKDIARDLILLYAKRKAQTGN
AFSPDTYLQRELEASFIYEDTPDQEKATNDVKKDMESPHPMDRLVCGDVGFGKTEVAIRA
AFKAVADSKQVAVLVPTTILALQHFRTFSERIKGLPANIDYINRFKSSKQIKDTLKRLEE
GKIDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPR
TLHFSLMGARDLSIISTPPPNRQPVQTELHVFNEELIKESVSYEIDRAGQVFFIHNRVAD
LPQLGLLIRKLVPGARVGIAHGQLEGDELEDVMLKFINHEYDVLIATTIIEAGLDIPNAN
TIIINQAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTNEAYKRLSAIEEFAELGS
GFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYNKILDEAVQELKDDEFGELFADDKDR
KYVSFTQIDTDLEVLIPDEYVTNISERYNLYNDIAKLKNEGELQVFEKEMIDRFGPIPAP
VFELFNTLRLQWLGKEIGLEKISYKKETLKGFFVSNTKSSYYQSEQFGKVLTFVQNHASI
SNLKEVKGQLRIAISNVNSIEYAIHLLSEIK
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgtccaagacctcttagaaaaatatagacaatctgaacaagtaaattccctaaag
gaaagaattcaagcgcgtaatccgaagattcaacttaaaggattaattggttcctccgac
gcgatgctcgcagcggcgctttataccgaggagaaaagaatgaatgtcttcatccttcca
aatcatgaagatgcctctttctttttgagcgaccttgaaagcttgtttgataaacaaata
ttattttttccatcatcctacaaaaaggctttcgatatcagtctactagatagtgcacat
gtactacagcgtgctgagacgctcagttcactgaaccacaactcggaactgccgcgtatt
gttgtcacctatccggacgcaatttgtgagaaggtgatcaataaacaggacctagagaaa
aacacactcgagattacccagaatataaaactcagtatagatttcattaatgaatttctc
tacgagtatgattttgagcgtgtagatttcgtctatgaacctggacaatttgctattcgt
ggaggaatcgtagatatcttttcgttttcaaacgatttaccctatcgtattgaatttttt
ggcgacgaaattgaaagtattcgaacttttgacattgagtcgcaattatcggtcagcaag
attcatacagtaactatcgttccgaatgtacaagcaaagtttctttctgcaaatcatata
tcattactggagtatatcgataaaaatgcgctggtttggattaaagatgtgcagtacact
ttggagatcattaaagagggctacagcaacagttctaaattctggaaagcactatctgaa
caagatttaaagcgcaatcccgattggattgacccgcgttttacgtttacagatgagaag
aatttcgcagcaatgctctttgaatttgctgtaatcgaatttggaaaacaattctattac
aaaccagacctgacgttaagtttcgatatacatccacagccatctttcaacaaagacttt
aatttgttgattcataatttccatgaaaatgagaagcatgcgattaagaatttgatattc
tcggattcgacgaaacaaatcgagcgaatctatgccattctcgatgatctggataagagc
attaccttcactccaatatataaagcacttcgggagggatttcgtgatgacgaacgaaaa
ttagcttgttatacagatcatcaaatttttgatcgttactacaaatataaacgtcgtaaa
ggttatgagcgttcgcaagcaatcacgctaaaagaacttagtgagttaaagcctggtgat
tacattacacatatcgaccatggagttggtaaatatgccggcttggagaaagtggatgtc
aatgggaaaacccaagagatgatccgcctaatgtatgccgatagtgacttattatatgta
aacataaactcgctaaaccgcatctcgaaatattcgggtaaagaaggcacagtgcctaag
atgaataaattagggacggacacttgggagaaactaaagaaaacaacgaagaaaaaggtt
aaagatattgcccgcgacctcattcttttatatgccaagcgtaaagcgcaaacgggtaat
gcctttagcccagacacttacttacaacgtgaattggaggcatcattcatttatgaagat
actccagatcaagaaaaggcgaccaacgatgtcaagaaggacatggaatcaccacaccct
atggaccgtcttgtctgtggtgatgtaggattcggtaaaaccgaagttgccattcgagcg
gcatttaaggctgttgctgacagcaaacaagttgctgtattggtaccaacaactattttg
gctttgcagcactttagaaccttttctgaacgaatcaaaggactaccagcgaacatcgac
tatatcaaccgattcaagtcttcaaaacagattaaagataccttaaaacgactagaggaa
ggaaagattgatattattatcggcacacatcgactagtgagtaaagatgtcaagtttaaa
gatctaggtttgatgattatcgatgaggaacaaaagttcggtgtttctgttaaagagaaa
ttaaaggttatgcgcgcaaacgttgactcattaactttaaccgcaacaccaatccctagg
actttacatttctctttaatgggtgctcgagatttaagtattatatcaactcctccaccc
aacagacaaccagttcagactgaattgcatgttttcaacgaggaactgattaaggagtct
gtgagctatgagattgaccgtgcaggtcaagtattctttatccataaccgggttgcagat
ttaccgcaattgggactacttattcgtaagttggttcctggcgctcgcgttggtatcgct
catgggcagctcgaaggagatgaactcgaagacgttatgttgaagttcatcaaccacgag
tacgatgtattaattgcgactacaattattgaagctggattagatataccgaatgcaaat
acgattatcattaatcaagcacacatgtttggcttgagcgatttacaccaaatgcgtggt
cgtgtgggccgttcaaataagaaagcattctgctatttgctgagccctcctttatcgaca
ttaacaaacgaagcatataagcgactttcggctattgaagagtttgcagaattgggttcg
ggtttcaatgtagcaatgcgcgatttggatattagaggatctggtaatttattaggtgct
gagcaatctggttttattgccgagattggtttcgaaatgtataacaagattctcgatgag
gccgttcaagagttgaaggatgatgaatttggagaattgtttgcagatgataaagaccga
aaatatgtatcctttacgcaaattgacaccgacttggaagtccttatacctgatgaatat
gtgacaaacatatccgaacgttataacttgtataatgatattgcgaagttgaagaacgaa
ggcgaacttcaagtatttgagaaagaaatgattgatcgatttggtccaattcctgcgcca
gtatttgagcttttcaacaccctacgattgcaatggctagggaaagaaataggtcttgag
aaaatttcttataagaaagaaacgttaaaaggcttcttcgttagcaataccaaatctagt
tactatcaatctgaacagtttggaaaagtattaacttttgttcaaaaccatgctagcatt
agtaatctaaaagaagtgaaagggcagttacgcatcgctattagcaatgtcaatagcatc
gaatatgccattcatttactttcagaaataaaatag
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