Sphingomonas sp. FARSPH: DM480_01190
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Entry
DM480_01190 CDS
T05685
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
sphf
Sphingomonas sp. FARSPH
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphf03032
]
DM480_01190
03036 Chromosome and associated proteins [BR:
sphf03036
]
DM480_01190
03400 DNA repair and recombination proteins [BR:
sphf03400
]
DM480_01190
DNA replication proteins [BR:
sphf03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
DM480_01190
Chromosome and associated proteins [BR:
sphf03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
DM480_01190
DNA repair and recombination proteins [BR:
sphf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
DM480_01190
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
DUF2267
HU-CCDC81_euk_1
HU-CCDC81_euk_2
VWA_3
Motif
Other DBs
NCBI-ProteinID:
AXJ94310
LinkDB
All DBs
Position
complement(238690..238962)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKQELIANVADTSGLAKGDATKAVEAVFDAITASLKKGDEVRLVGFGTFSVSKRKASTG
RNPRTGEPMTIKASSQPKFKAGKGLKDSVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagcaagagctgattgccaatgttgccgacacgtcgggactcgcgaagggggat
gcgacgaaggcggtcgaggcggtgttcgacgcgatcacggccagcctgaagaagggcgac
gaagtgcgtctggtcgggttcggcacgttttccgtgtccaagcgcaaggcatcgacggga
cgcaacccgcgcaccggcgagccgatgacgatcaaggcatcgagccagcccaagttcaag
gcgggcaaggggctgaaggactcggtcaactga
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