Sphingomonas sp. FARSPH: DM480_01555
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Entry
DM480_01555 CDS
T05685
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DM480_01555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphf03400
]
DM480_01555
Enzymes [BR:
sphf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DM480_01555
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DM480_01555
DNA repair and recombination proteins [BR:
sphf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DM480_01555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AXJ94366
UniProt:
A0A345WL14
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All DBs
Position
complement(307628..308443)
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AA seq
271 aa
AA seq
DB search
MPELPEVETTVRGLTPVLAGHRLTLVEPRRADLRKAIPVDLRQRITGATVTSLGRRAKYG
LIDTDRGDTLIFHLGMSGRWRVDPAEEMAHDHLVLETDAGRRLALNDARRFGFLDLWRSD
ALDDYPPFAAMGPEPLGPSFTGAYLAKVLDGRAAPIKAMLLDQRIVAGLGNIYVCEALHL
ARIAPTRAAGQIARARLDRLAAAVREVLLAAIEAGGSSLRDYARPDGELGYFSKQFLVYG
REGESCHCGGVVQRRVDSGRSTFFCPKCQRG
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
gtgccagaacttcccgaagtcgaaaccaccgtccgcgggctgacccccgtgctcgccggc
catcgcctgacgttggtcgaaccgcgccgcgccgacctgcgcaaggcgatccccgtggac
ctgcgccagcggattacgggcgcgaccgtcacgtcgctcggtcggcgtgccaaatacggg
ctgatcgataccgatcgcggcgatacgctgatcttccatctcggcatgtcgggccgctgg
cgcgtcgatccggcggaggagatggcgcacgaccatctcgtgctggaaacggatgcgggg
cggcgactcgcgctcaacgacgcgcgccgattcggcttcctcgatctgtggcgcagcgat
gcgctcgacgactatccgccgttcgccgcaatgggccccgagccgctcggcccgtcgttc
accggcgcgtatttggcgaaggtccttgatgggcgcgcggcgccgatcaaggcgatgctg
ctcgaccagcggatcgtcgcgggactcggcaacatctacgtgtgcgaggcgctgcacctc
gcgcgcattgccccgacgcgcgcggcggggcagatcgcacgcgcgcggctcgaccggctg
gccgcggcggtgcgcgaggttctgctcgccgcgatcgaggcagggggatcaagcttgcgt
gattatgcccggcccgacggcgagctcggctatttctcgaaacagttcctcgtctacggg
cgcgagggcgaatcgtgccattgcggcggcgtcgtccagcggcgcgtcgattcggggcga
tcgaccttcttctgccccaaatgccagcgcggctga
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