Sphingomonas sp. FARSPH: DM480_01845
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Entry
DM480_01845 CDS
T05685
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DM480_01845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphf03021
]
DM480_01845
03400 DNA repair and recombination proteins [BR:
sphf03400
]
DM480_01845
Enzymes [BR:
sphf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DM480_01845
Transcription machinery [BR:
sphf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DM480_01845
DNA repair and recombination proteins [BR:
sphf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DM480_01845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
Motif
Other DBs
NCBI-ProteinID:
AXJ94417
UniProt:
A0A345WL65
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All DBs
Position
complement(376579..377646)
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AA seq
355 aa
AA seq
DB search
MSVNAKNWQELKKPNGLEKKSGDGKRKATFIAEPLERGFGLTLGNALRRVLLSSLQGAAV
TSIKIENVLHEFSSLAGVREDVTDIVLNVKQIAIRMQGEGPKRLQLSATGPAEVKAGDIA
VSGDIEVMNPELVICHLDEGATFNMELTADIGKGYVPATANRPADAPIGLIPVDALYSPV
RQVSYKVDPTRVGQDLDYDKLTLTIETDGTVTPEDAVAYAGRILQDQLALFVHFDDSAIA
RSSAPIGQAAVPAAGGEVAGDTQQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVGK
TEAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMEIPGWPPENIEEMAKKLEQEIMG
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgtcaatgcaaagaactggcaggaactgaagaagcccaacggccttgagaagaag
tccggtgacggcaagcgcaaggcgaccttcatcgccgagccgctggagcggggcttcggc
ctgacgctcggcaacgcgctgcgccgcgtgctgctgtcgtcgctgcagggtgcggcggtg
acctcgatcaagatcgagaacgtgctgcacgaattctcgagcctggcgggtgtccgcgag
gacgtcaccgacatcgtgctcaacgtcaagcagatcgcgatccgcatgcagggcgaaggc
ccgaagcggctccagctgtcggcgacgggcccggccgaggtgaaggcgggcgacattgcg
gtgtcgggcgacatcgaggtgatgaaccccgaactcgtcatctgccacctcgacgagggc
gcgacgttcaacatggaactgaccgccgacatcggtaagggttatgttcccgcgaccgcc
aaccgtccggcggatgcgccgatcggcctgatcccggtcgacgcgctctactcgccggtg
cgccaggtgtcgtacaaggtcgacccgacccgcgtcggtcaggacctcgactacgacaag
ctgacgctgacgatcgaaaccgacggcacggtgacgcccgaggacgcggtggcctatgcc
ggccgcattttgcaggaccagctggcgctgttcgtccacttcgacgactcggcgatcgcg
cgctcttcggcgccgatcggccaggctgccgtcccggcggcgggcggcgaggtcgcgggc
gacacgcagcagatcaaccgttacctgctcaagaaggtcgacgagctcgaactgtcggtg
cgttcggcgaactgcctgaagaacgacaacatcatctacatcggcgatctggtcggcaag
accgaggccgagatgctgcgtaccccgaacttcggccgcaagtccttgaatgaaatcaag
gaagtgctctcgtcgatggggcttcgcctgggcatggaaatcccgggctggccgcctgag
aatatcgaggaaatggccaagaagctcgagcaggagatcatgggctga
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