Sphingomonas sp. FARSPH: DM480_03725
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Entry
DM480_03725 CDS
T05685
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DM480_03725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphf03400
]
DM480_03725
Enzymes [BR:
sphf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DM480_03725
DNA repair and recombination proteins [BR:
sphf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DM480_03725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PriA_C
PriA_3primeBD
ResIII
Zn_ribbon_PriA
Helicase_C
AAA_30
Zn_ribbon_6
TetR_C_29
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AXJ94739
LinkDB
All DBs
Position
738295..740466
Genome browser
AA seq
723 aa
AA seq
DB search
MSTRARVLVLNSALGPLDYRVPAGMHVEPGSIVVAPLGPRQLIGVVWEPERMPSDAEVGD
NRLRNLLAVADAPPLGDALRRLVEWTADYYLAPPAAVVRMALSSTSALEGARTVTEYRAT
GEVPPRLTPQREQALERIGDRQGLIRELAGIADVSDAVIRGLVKAGALRAVAVDIDTPFP
RPDPGFGAPKLSSDQQAAADTLVAGVAAHAFRPVLLDGVTGSGKTEVYFEAVAEAIRQGR
QCLVLLPEIALTEPFLKRFHDRFGCEPVAWHSGLRSTQRRRAWRAIASGEALVTVGARSA
LFLPYRDLGLIVVDEAHETSFKQEEGVHYHARDVAVMRGKFEHCPVILASATPAIETRQQ
VALGRYEELKLPGRFGAAEMPTIEPIDLIAEPPERGRWLAPKLVKALGETLAKGEQALLF
LNRRGYAPLTLCRNCGHRFQCPNCTAWMVEHRLTRRLACHHCGHVMPTPRACPECSAEDS
LVACGPGVERIADEVTALFPEAKVAVVTSDTIWSPAKAAEFVGRMEAGDIDIVVGTQLVT
KGYHFPNLTLVGVVDADLGLEGGDLRAAERTFQQIRQVSGRAGRGEKPGHVFIQTHSPSA
QVMQALVTGDADAFYAAETEARADAGAPPFGRYAAIIVSSEDQAAAHDVARNVAAGAPRV
EGMAVYGPAPAPLAMLRGRHRYRLLVHARRALDVQDVIRGWLGGLDWPAKVRVTVDVDPY
NFL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacccgcgcccgcgtcctcgtcctcaactccgcgctcggcccgctcgactatcgc
gtgcccgcggggatgcatgtcgagccgggatcgatcgtcgtcgcgccgctcggcccgcgt
cagctgatcggcgtcgtgtgggagccggagcggatgccgtccgacgcggaagtcggcgac
aaccgactgcgcaacctgctcgcggtcgccgatgcgccgccgctgggcgacgcactgcgg
cgcctggtcgagtggaccgcggattattatctcgcgccgcccgccgcggtggtgcgcatg
gcgctgtcgtccacctctgcgctggagggcgcgcgcaccgtcaccgaatatcgcgcgacg
ggcgaggtgccgccgcgcctgacgccgcagcgcgaacaggcgctggagcggatcggtgac
cgacaggggctgatccgcgaactggcggggatcgccgacgtttccgacgcggtgatccgc
ggcctggtcaaggccggcgcgctgcgcgccgtcgcggtcgatatcgacaccccttttccc
cgccccgaccccggtttcggcgcgccgaagctgtcgagcgaccagcaggccgcggccgat
acgctcgttgccggcgtcgcggcgcatgcgttccgccccgtcctgctcgacggcgtcacc
ggatcgggcaagacggaggtgtatttcgaggcggtggcggaggcgatccgccaggggcgc
caatgcctcgtcctgcttcccgagatcgcgctgaccgaacccttcctcaagcgctttcac
gaccgcttcgggtgcgagcccgtcgcctggcattcgggcctgcgatcgacgcagcggcgg
cgcgcgtggcgcgcgatcgcgagcggcgaggcgctggtgacggtgggtgctcgatcggcg
ctgttcctgccctatcgcgacctcggcctgatcgtcgtcgacgaggcgcacgagacgagc
ttcaagcaggaagagggcgtgcattaccatgcgcgcgacgtcgcggtgatgcgcggcaag
ttcgaacattgcccggtgatcctcgccagcgcgacgcccgcgatcgagacgcgccagcag
gtggcactgggccggtacgaggaactgaagctgcccggtcgcttcggcgcggcggagatg
ccgacgatcgagccgatcgacctgatcgccgaaccccccgagcgcgggcgctggcttgcg
ccgaagctggtcaaggcgctgggcgagacgctggcgaagggcgagcaggcgctgctgttc
cttaaccggcgcggctatgcgccgctgaccttgtgccgcaattgcgggcaccggttccag
tgccccaattgcaccgcttggatggtcgagcaccggctgacccgccggctcgcctgccac
cattgcgggcacgtgatgccgacgccgcgcgcctgccccgaatgcagcgcggaggacagt
ttggtcgcgtgcggccccggcgtcgagcggatcgcggacgaggtgaccgcgctgttcccc
gaagcgaaggtcgcggtcgtcacctcggacacgatctggtcgcccgccaaggcggcggag
ttcgtcggccggatggaggcgggcgacatcgacatcgtcgtcggcacgcagctcgtcacc
aagggctatcatttccccaatctgacgctcgtcggcgtcgtcgatgcggacctggggctg
gagggcggcgacctgcgcgccgccgaacgcacgttccagcagatccggcaggtgtcgggg
cgcgcggggcgtggggaaaagccgggccatgtgttcatccagacgcacagcccgtcggcg
caggtgatgcaggcgctggtgacgggcgatgcagacgccttttacgccgcggagacggag
gcgcgggcggacgcgggcgcgccgcccttcggccgctatgccgcgatcatcgtctcttcg
gaggatcaggcggcggcgcacgacgtcgcgcgcaatgtcgccgcgggggcgccgcgcgtc
gagggcatggcggtctatggccctgcccccgccccgctcgcgatgctgcgcggccgccac
cgctatcggctgctcgtccacgcgcgccgcgcgctcgacgtgcaggatgtgatccgcggc
tggctgggggggctcgactggcccgcgaaggtgcgcgtgacggtcgacgtcgatccgtac
aatttcctgtga
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