Sphingomonas sp. FARSPH: DM480_06870
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Entry
DM480_06870 CDS
T05685
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM480_06870 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphf03021
]
DM480_06870 (rho)
03019 Messenger RNA biogenesis [BR:
sphf03019
]
DM480_06870 (rho)
Transcription machinery [BR:
sphf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DM480_06870 (rho)
Messenger RNA biogenesis [BR:
sphf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DM480_06870 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
Spore_III_AA
S1CSD-TOTE-2
AAA_22
NACHT
GpA_ATPase
AAA_25
AAA_14
AAA
Motif
Other DBs
NCBI-ProteinID:
AXJ95270
LinkDB
All DBs
Position
1404645..1405901
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKKKTPAELVSMAEELGVESASTLRKQDLLFAILKVQAENGDQIMGLGTIEVLPD
GFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPKDGERYFAITRLTSVN
FDDPDAVRHRVNFDNLTPLYPESKLTLDPADPTQKDKSARVIDIVSPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITDNHPEVFLLVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHV
AVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFPALDV
GKSGTRKEELLVDKDKLSKQWVLRRILMQMGTIDAMEFLLDKMKNSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaagatttgaagaaaaagacgcccgccgaactggtcagcatggccgaggaa
ttgggggtcgagagcgcctcgaccttgcgcaagcaggatctgctgttcgcgatcctgaag
gtgcaggcggaaaatggcgaccagatcatgggcctcggcacgatcgaggtcctgcccgac
ggcttcggcttcctgcgcagcccggaggcgaactacctcgccggtcccgacgacatctat
gtctcgcccaaccaggtccgcaaatggggcttgcgcaccggtgacaccgtcgagggcgaa
atccgcgcgcccaaggatggcgagcgttatttcgcgatcacgcggctgacgtcggtcaat
ttcgacgatcccgatgcggtccgccatcgcgtcaacttcgacaatctgacgccgctgtat
ccggaatcgaagctcacgctcgatcccgccgatccgacgcagaaggacaagtcggcgcgc
gtcatcgacatcgtcagcccgcagggcaagggccagcgtactttgatcgtcgcgccgccc
cgcgtcggcaagacggtgatgctgcagaacatcgccaaggcgatcaccgacaaccatccc
gaggtgttcctgctcgttctgctcatcgatgagcggcccgaggaagtcaccgacatgcag
cgcagcgtgaagggtgaggtcgtctcctcgaccttcgacgagcccgcgcagcgccacgtc
gcggtcgccgaaatggtgatcgaaaaggccaagcgcctcgtcgagcacaagaaggacgtc
gtgatcctgctcgattcgatcacgcgtctcggccgcgcctacaacaccgtcgtgccgtcg
tcgggcaaggtgctgaccggcggtgtcgacgccaatgcgttgcagcgccccaagcgcttc
ttcggcgcggcgcgcaacatcgaggagggcggttcgctgtcgatcatcgccaccgcgctg
atcgacaccggcagccgcatggacgaggtgatcttcgaagagttcaagggcaccggtaac
tccgaaatcgtcctcgaccgcaaggtcgccgacaagcgcgtcttcccggcgctcgacgtc
ggcaagtcgggcacccgcaaggaagagctgctggtcgacaaggacaagctcagcaagcag
tgggtgctgcgccgcatcctgatgcagatgggcacgatcgacgcgatggagttcctgctc
gacaagatgaagaattcgaagaccaacgaagactttttcgacagcatgaatcaatag
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