Sphingomonas sp. FARSPH: DM480_06945
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Entry
DM480_06945 CDS
T05685
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03030
DNA replication
sphf03410
Base excision repair
sphf03420
Nucleotide excision repair
sphf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM480_06945
03410 Base excision repair
DM480_06945
03420 Nucleotide excision repair
DM480_06945
03440 Homologous recombination
DM480_06945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphf03032
]
DM480_06945
03400 DNA repair and recombination proteins [BR:
sphf03400
]
DM480_06945
Enzymes [BR:
sphf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DM480_06945
DNA replication proteins [BR:
sphf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DM480_06945
DNA repair and recombination proteins [BR:
sphf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
DM480_06945
NER (nucleotide excision repair)
GGR (global genome repair) factors
DM480_06945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
HHH
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AXJ95283
LinkDB
All DBs
Position
complement(1420645..1423410)
Genome browser
AA seq
921 aa
AA seq
DB search
MPHLYLVDGSGYIFRAYHRLPPLTNKHGEPVGAVYGYTTMLWKLADDLHKADGPTHMAVI
LDKSSQTFRNELYGQYKAHRPPPPEDLVPQFPMIRDATRAFSLPCIEEQGWEADDLIASY
TKAALAQGWQVTIVSSDKDLMQLMTDPSVDMLDTMNNRRLGPDAVVEKFGVGPEKLGDVL
ALMGDSVDNVPGVPGVGPKTAAKLILEHGDVEGVLAAAEGMKKGKLRDNLIEHAGAARLS
RKLVELACDVPLPQPLEELSLADGIPDAPLRAFLDHHGFRSLLSRLGEVADAPVAESPTD
VAFDDDEPACDHDGYETVVDEGALDRWITVARHQGWVAIDTETTAKDPMLAELVGVSMAL
APNLACYVPLAHGGTDMFAEKPPQLGMEAALAKLKPLLEDPSVLKIGHNLKYDMIVLGRL
GVRVAPYDDTIVMSFDLDAGLHGHGMDELAATHLSHSCIAYKDVVGTGKKALGFHEVDLK
AATKYAAEDADVTLRLWRRFAARLPVESGTRVYQMVDRPLVAVIARMEARGVKVDREKLA
QLSGDFATQIASLEGVVHDLAGGPFTIGSPKQLGDVLFERMGLKGGRKGKSGVYSTDVNE
LERLAADRDSPGAEIATKVLEWRQLTKLKNTYTDTLQEQINPATGRVHTSYSLTGAQTGR
LSSTDPNLQNIPIRTEVGRQIRDAFVAEPGNVILAADYSQIELRLAAHMADVPQLREAFA
RGDDIHSLTAQELFGEVTRDTRASAKTINFAILYGISRWGLAGRLDIGADEAQAMIDRYF
ERFPGINRYIAETLTQVRERGFTETLFGRKTHFPRIRSKVQHERQGAERAAINAPIQGTS
ADIIKRAMVRMEPALAAAGLHDVRMLLQVHDELVFELPEGDVAAARPVIEQVMANAAAPA
VQLTVPLGIEIGVGPSWGAAH
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgccccatctctatctcgtcgacggctcgggctatatcttccgcgcctaccaccggctg
ccgccgctcaccaacaagcatggcgagccggtgggcgcggtctatggctatacgacgatg
ctgtggaagctcgccgacgacctccacaaggcggacgggccgacgcacatggcggtcatc
ctcgacaagtcgagccagacgttccgcaacgaactctacggccagtacaaggcgcaccgc
ccgccgccgcccgaggacctggtcccgcaattcccgatgatccgcgacgcgacgcgcgcc
ttctcgctgccgtgcatcgaggaacaggggtgggaggcggacgacctgatcgccagctac
accaaggcggcgctggcgcagggatggcaggtgacgatcgtcagttccgacaaggacctg
atgcagctgatgaccgatccgtcggtcgacatgctcgacacgatgaacaaccgccgactg
gggccggacgcggtcgtcgagaagttcggcgtcgggccggagaagctgggcgacgtgctc
gcgctgatgggtgacagcgtcgacaacgtgccgggcgtgccgggcgtcgggccgaaaacc
gcggccaagctgatcctggagcatggcgatgtcgagggcgtgctcgccgcggcggaaggc
atgaagaaggggaagctgcgcgacaatctgatcgagcatgcgggcgcggcgaggctcagc
cgcaagctggtcgagcttgcctgcgacgtgccgctgccgcagccgctggaggaactgtcg
ctggcggacggcattcccgacgcgcctttgcgtgccttcctcgaccatcacggtttccgc
tctttgctctcgcgtctgggcgaggtggccgatgcgcccgttgccgaatcgccgaccgac
gtcgcgttcgacgacgacgagccagcatgcgatcacgacggctacgagacggtcgtcgac
gagggtgcgctggatcgctggatcaccgtcgcgcggcaccagggctgggtcgcgatcgat
accgagacgaccgcgaaggatccgatgctcgccgagctggtcggcgtgtcgatggcgctg
gcgcccaatctcgcctgttacgtgccgctggcgcatggcggcaccgacatgttcgccgaa
aagccgccgcagcttggcatggaggccgcgctggcgaagctgaagccgctgctggaggat
ccgagcgtcctcaagatcggccacaacctgaagtacgacatgatcgtgctcgggcggctg
ggcgtccgggtcgcgccctatgacgacacgatcgtgatgagcttcgatctcgatgccgga
ctgcacgggcacggcatggacgaactcgccgcgacgcacctgtcgcacagctgcatcgcg
tacaaggacgtcgtcggcaccggcaagaaagcgctaggcttccacgaggtcgatctgaag
gcggcgacgaaatacgccgccgaggatgccgacgtgacgctgcgattgtggcgacggttc
gccgcacgcctgccggtggagagcggcacgcgcgtctaccagatggtcgaccggccgctg
gtcgcggtgatcgcccggatggaggcacgcggcgtcaaggtcgatcgcgagaagctggcg
cagctgtcgggcgacttcgccacgcagatcgccagcctggaaggcgtcgtccacgacctt
gccggcgggccgttcacgatcggcagtcccaagcagctgggtgacgtgctgttcgagcgc
atgggcctgaagggcggccgcaagggcaagagcggcgtctattcgaccgacgtcaacgaa
ctggaacggctggcggccgaccgggattcgccgggcgcggagatcgcgaccaaggtgctc
gaatggcgccagctcaccaagctcaagaacacctataccgatacgttgcaggagcagatc
aaccctgcgacgggccgcgtccataccagttactcgctgaccggcgcgcagaccgggcga
ttgtcgtcgaccgatcccaatctgcaaaacatccccatccgcaccgaggtcggccgccag
atccgcgacgccttcgtggcggaaccgggcaacgtcatcctcgccgccgactattcgcag
atcgagctgcgccttgccgcgcacatggcggacgtgccgcagctgcgcgaggcgttcgcg
cgcggcgacgacatccacagcctgaccgcgcaggaattgttcggcgaggtgacgcgcgac
acgcgcgccagtgccaagacgatcaacttcgcgatcctctacggcatcagccgctggggc
ctcgcagggcggctggatatcggtgccgacgaagcgcaggcgatgatcgaccgctatttc
gagcggttcccgggcatcaaccgctacatcgccgaaacgctgacgcaggtgcgcgagcgc
ggcttcaccgagactttgttcggccgcaagacgcatttcccgcgcatccgcagcaaggtg
cagcacgagcgccagggcgccgaacgcgccgcgatcaacgcgccgatccagggaacgagc
gccgacatcatcaagcgcgcgatggtgcggatggaacccgccctcgccgccgcagggctg
cacgacgtgcgcatgctgctgcaggtccacgacgaactcgtcttcgaactgcccgagggc
gatgtcgcggcggcgcggccggtgatcgaacaggtgatggcgaacgcggcggcgccggcg
gtgcagctgaccgtgccgctgggcatcgagatcggcgtggggccaagctggggagcggcg
cattga
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