Sphingomonas sp. FARSPH: DM480_07205
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Entry
DM480_07205 CDS
T05685
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf02020
Two-component system
sphf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DM480_07205
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DM480_07205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphf03021
]
DM480_07205
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sphf02035
]
DM480_07205
Transcription machinery [BR:
sphf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DM480_07205
Bacterial motility proteins [BR:
sphf02035
]
Flagellar system
Flagellar assembly proteins
Stator
DM480_07205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
AXJ95328
LinkDB
All DBs
Position
complement(1466887..1467660)
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AA seq
257 aa
AA seq
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MSMEPMNQTFRDGQPAPAALIPPLTYSPRRRPEAEKEALIRQYLPLVRRIAWHVHGSMST
IVDVEDLVQIGLVALVEAVGQAAEQGGQFRAYLQTRLRGAMIDELRRQATATRGAMRRRR
QYQEAVAALAQGSGHAPGEAAIAQHLGVTIERLRTDYATADTLRFESIDDVYQDDMPWFA
DDTPDAFAQLAESDLRETLIAAIGALPEREALVIQLYYVEELNLEEIGQVLGVGSARVCQ
IKAAAHARLKKALARKV
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgagcatggaaccgatgaaccagacgttccgcgacggacagccggcccccgccgcgctg
atcccgccgctgacctattcgccgcggcgccggccggaggcggagaaggaagcgctgatc
cgccagtatctgccgctcgtgcggcgcatcgcgtggcacgtgcacgggtcgatgagcacg
atcgtcgatgtcgaggatctggtgcagatcggcctcgtcgcgctggtcgaggcggtcggc
caggccgcggaacagggcggccagttccgcgcctacctgcagacgcggctgcgcggcgcg
atgatcgacgaattgcggcgccaggcgaccgcgacgcgcggcgcgatgcggcggcggcgg
caatatcaggaggcggtggccgcgctggcgcagggcagcggccatgcgccgggcgaggcg
gcgatcgcgcagcacctgggggtcactatcgagcggctgcgcaccgactatgcgaccgcg
gatacgctccgtttcgaatcgatcgacgacgtctatcaggacgatatgccctggttcgcg
gacgacacgcccgacgccttcgcgcagctggccgaaagcgacctgcgcgagacgctgatc
gccgcgatcggcgcgctgcccgaacgcgaggctctggtcatccagctctattacgtcgag
gagctgaacctcgaggagatcgggcaggtgctgggcgtcggatcggcgcgcgtctgccag
atcaaggcggcggcgcacgccaggctgaagaaggcgctcgcccgtaaggtgtga
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