Sphingomonas sp. FARSPH: DM480_09700
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Entry
DM480_09700 CDS
T05685
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM480_09700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphf03019
]
DM480_09700
03009 Ribosome biogenesis [BR:
sphf03009
]
DM480_09700
Enzymes [BR:
sphf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DM480_09700
Messenger RNA biogenesis [BR:
sphf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DM480_09700
Ribosome biogenesis [BR:
sphf03009
]
Prokaryotic type
rRNA processing factors
DM480_09700
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AXJ96985
LinkDB
All DBs
Position
complement(2042214..2044946)
Genome browser
AA seq
910 aa
AA seq
DB search
MLIDARHREETRVAVVKNNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPKEDRDALLREEAEHAAEEAALRAEHDGDDEDFDGDHDAADHD
DDRHHDEHDDHAEDGEAPAAGTSKRPRGNGNDDQVEALRQRRMNLRRRYKIQDVIRRRQV
LLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKSIMADM
QLPSSMGCIVRTAGLQRTKTEIKRDFDYLARLWDGIRENTLHSSAPALIYGDSDLIKRAI
RDIYNREIDEVIVEGEEGYRHAKDFMKLLMPSHARRVKQYADAVPLFQRAHVEDQLAAMY
NPVVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAKEIARQLRLRDM
AGLVVIDFIDMDNGSNVRKVEKAMKEALKDDRARIQVGRISSFGLMEMSRQRLRTGVLEA
STRPCPHCEGTGLVRTASSSGLSALRLIEDEAARGRGSVLTLRASQEAAIYVLNKKRGDI
AEIEDRYGVIVEILPDREEEGARMSVEASGPPPAHAPKIEPLVEDLDDDLPEEIEEEFDE
EDEVEAETDTRAPREERGEGEDGEGRRGRGRRRRRGRGRGRRDEQNGQDGQHAEADIAPA
DDDSAEDTGDDEAHIDAEDDTPTDQAQGEKRRRRGRRGRRGGRRIVEGTIDAAEGADAEA
GDPAAPELEPIVEAGDAGPVTTGLDAPVTEPVEDAPAEAPRTRRRPRARKTADTAVETAA
PAQPAADTVAAEVAPAAEAAEAVPAAKPKRTRKKAATVAQDVPVVSEAPAEATAEPAPKP
KRTRRKATPAATADAGTEGAPTQAAAAPVPDTPAPVAAEPAGDDTGADANPADDAGETPR
RGWWQRTFGG
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgacgcacgccaccgggaagaaacccgggtcgccgtcgtcaagaacaatcgt
attgaagaattcgacttcgaatccgccgaacgcaagcagctcaagggcaacatctatctc
gccaaggtgacgcgcgtcgagccgtcgctgcaggcggcgttcgtcgattacggcggcaat
cgccacggcttcctggcgttcagcgaaatccacccggattattaccagatccccaaggag
gatcgcgacgcgctgctgcgcgaagaggcggagcatgccgccgaggaagccgcgctgcgc
gccgaacatgacggggacgacgaggatttcgacggcgaccacgacgccgccgaccatgac
gacgatcgtcaccacgacgagcatgacgaccatgccgaggacggcgaggcgcccgccgcc
ggcacgtcgaagcgcccgcgcggcaacggcaacgacgaccaggtcgaggcgctgcgccag
cgccgaatgaacctgcgccgccgctacaagatccaggacgtgatccgccgccgccaggtg
ctgctggtccaggtcgtcaaggaagagcgcggcaacaagggtgcggcgctgaccacctat
ctcagcctcgccggccgttactgcgtgctgatgcccaacacgtcgcacggcggcggcatt
tcgcgcaagatcagcaacgcggccgaccgcaagcggttgaagtcgatcatggcggatatg
cagctgccctcgtcgatgggctgcatcgtgcgcaccgcgggactccaacgcaccaagacc
gagatcaagcgcgacttcgactatctggcgcgcctgtgggacggcatccgcgagaacacg
ctgcattcgtcggcgccggcgctgatctacggcgacagcgatctcatcaagcgcgcgatc
cgcgacatctacaatcgcgagatcgatgaagtcatcgtcgagggcgaggaaggctatcgc
cacgccaaggacttcatgaagctcttgatgccgagccatgcgcggcgcgtgaagcaatat
gccgacgcagtgccgctgttccagcgcgcgcacgtcgaggatcagctggcggcgatgtac
aaccccgtcgtccagctgaagtcgggtggctatctggtcatcaacccgaccgaggcgttg
gtgtcgatcgacatcaactccggccggtcgacgcgtgagcacaacatcgagcagaccgcg
acggcgacgaacctggaagcggcgaaggaaatcgcccgccagttgcgcctgcgcgacatg
gccggcctcgtcgttatcgacttcatcgacatggacaacggctccaacgtccgcaaggtc
gaaaaggcgatgaaggaggcgctgaaggacgaccgcgcgcgtatccaggtcggccggatc
agcagtttcggcctgatggagatgagccgccagcgcctgcgcaccggcgtgctcgaggcg
tcgacgcgcccctgcccgcattgcgagggcaccggcctcgttcgcaccgcctcgtcgtcg
ggcctgtcggcgctgcgcctaatcgaggacgaggccgcgcgcggccgcggctcggtgctg
acgctgcgcgcgagccaggaagcggcgatctacgtgctcaacaagaagcgcggcgacatc
gcggagatcgaggatcgctatggcgtgatcgtcgagattctgcccgatcgcgaggaggag
ggcgcgcgcatgtcggtcgaggcgagcggcccgccgcccgcgcacgccccgaagatcgag
cctttggtcgaggatctcgacgatgacctgcccgaggagatcgaggaggagttcgacgag
gaggacgaggtcgaggcggaaaccgatacgcgtgccccgcgcgaggagcgtggcgaaggc
gaggatggcgagggccgtcgtggtcgcggccgccgccgccgccgcggtcgcggccgtggt
cgtcgcgacgagcagaacgggcaggacgggcagcatgccgaggcggacatcgcgccggcg
gatgacgacagtgccgaggataccggagacgacgaggcgcatatcgacgccgaggacgat
acccccaccgaccaggcgcagggcgaaaagcgccgccgccgcggtcgtcgcggtcgtcgc
ggcggacgtcgcatcgtggaaggcacgatcgacgccgccgagggcgcggatgctgaggcc
ggcgaccccgccgcgccggagctcgagccgatcgtcgaggcgggcgacgccgggccggtg
accacgggccttgacgcccccgtcaccgagccggtcgaggacgcacccgccgaggcaccg
cgcacccgtcgccgcccccgtgcacgcaagaccgccgacacggcggtcgagacggcagcg
cccgcgcagccggcagccgacacggtcgccgccgaggttgctcccgccgccgaagccgcg
gaggcggtgcccgccgccaagcccaagcggacgcgcaagaaggccgcgaccgttgcgcaa
gacgtgccggtcgtcagcgaagcaccggcggaagccactgccgagccagcgcccaagccg
aagcggacgcgccgcaaggcgacgcccgccgcgaccgcggacgcgggtacggaaggcgcg
ccgacgcaggccgccgccgcgccggtgcccgacacccccgcccctgtggcggcggaaccg
gccggcgacgacaccggcgctgacgccaacccggccgatgacgccggcgagacgccgcgc
cgcggctggtggcagcgcaccttcggcggctga
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