KEGG   Sphingomonas sp. FARSPH: DM480_10475
Entry
DM480_10475       CDS       T05685                                 
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
sphf  Sphingomonas sp. FARSPH
Pathway
sphf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sphf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DM480_10475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphf03400]
    DM480_10475
DNA repair and recombination proteins [BR:sphf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DM480_10475
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      DM480_10475
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR DEAD AAA_30 UB2H DUF87 AAA_16 SWI2_SNF2 AAA_22 DUF2963 Kinesin Microtub_bd eIF3_p135
Other DBs
NCBI-ProteinID: AXJ95872
LinkDB
Position
complement(2204763..2206964)
AA seq 733 aa
MAIQIRTSLAEPETGESFVPHRPARPDKVEGGKRFELVSEYTPSGDQPTAIRELTEAARA
GEKDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKSFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNESIDRMRHSATRSLLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQTADQREIVRKLVALQYKRNDAAFARGNFRVKGDTLEVFPSHYEDT
AWRISFFGDDIEEIVEFDPLTGKKIASLNSVRIYANSHYVTPGPTLKQATEAIKHELSER
LKELVAEGKLLEAQRLEQRTNFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYLP
ENAVLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTV
SVSATPGTWEMEQTGGVFAEQVIRPTGLIDPPVEIKPVEEQVQDLIQECKATTAKGYRSL
VTTLTKRMSEDLTEYMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGL
DIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERAMNETSR
RREKQEAYNREHGITPATVRKNIGDIIAHVASQDQVTVPIDEDGQRPHMVGHNLRAYIEE
LEKKMRKAASDLEFEEAGRLRDEIRSLEQEELGLPVEQHKAPIMGRSNEGKPGTRKTRYG
KQQKMRMGGSRSR
NT seq 2202 nt   +upstreamnt  +downstreamnt
atggccatccagatccgcaccagcctcgccgagccggaaacgggcgaaagcttcgtcccc
caccgccccgcgcgccccgacaaggtggaaggcggcaagcgcttcgaactggtcagcgaa
tatacgccgtcgggcgaccagccgacggcgatccgggaattgaccgaagccgcgcgcgcc
ggcgagaaggaccaggtgctgcttggcgtcaccggctcgggcaagaccttcaccatggcg
aaggtgatcgaagaactgcagcgccccgcgctgatcctcgcgcccaacaagatcctcgcc
gcgcagctgtacggcgagttcaagagcttcttccccaacaacgcggtcgaatatttcgtc
agctattacgattactaccagccggaggcctacgtcccgcgatcggacacgtatatcgag
aaggaaagctcggtgaacgagtcgatcgaccggatgcgccactcggccacccggtcgctg
ctcgaacgcgacgacgtcatcatcgtcgcctccgtctcgtgcctgtacggcatcggctcg
gtcgaaacctattcggcgatgatcttcgacctcaagaagggccagaccgccgaccagcgc
gagatcgtgcgcaagctcgtcgcactccagtacaagcgcaacgacgccgccttcgcgcgc
ggcaacttccgcgtgaagggcgacacgctcgaagtgttcccgtcgcactatgaggatacc
gcctggcggatcagcttcttcggcgacgacatcgaggagatcgtcgagttcgatcccttg
accggcaagaagatcgccagcctcaactcggtccgcatctatgcgaacagccactatgtc
acgccgggcccgacgctgaaacaggcgacggaggcgatcaagcacgagctcagcgaacgg
ctcaaggaactcgtcgccgagggcaagctcctcgaggcgcagcggcttgagcagcgcacc
aatttcgacctcgagatgatcgccgccaccggcagctgcaacggcatcgagaattacagc
cgcttcctcaccggccgcctgcccggcgagccgccgcccaccctgttcgaatatctgccc
gaaaacgccgtgctgttcgtcgacgaaagccaccagaccgtgccgcagatcggcgcgatg
gcgcgcggcgaccaccgtcgcaagatcacgctcgccgaatatggcttccgcctgccgtcg
tgcatcgacaaccgccccttacgcttcaacgaatgggacgcgatgcgcccgcagacggtc
agcgtctcggcgacgcccggcacatgggagatggagcagaccggcggcgtcttcgccgaa
caggtcatccgccccaccggcctgatcgacccgccggtcgagatcaagcccgtcgaggaa
caggtgcaggacctgatccaggagtgcaaggcgacgacggcgaagggctatcgcagcctc
gtgacgacgctcaccaagcgcatgagcgaggacctcaccgaatatatgcacgaagcgggg
atcaaggtccgctacatgcattccgacgtcgagacgctggagcgtatcgagcttatccgc
gacctgcggctcggcgtctacgacgtcctcatcggcatcaacctgttgcgcgagggcctc
gacatccccgaatgcgggctggtcgcgatcctcgacgcggacaaggaaggcttcctgcgc
tccgagacgtcgctgatccagacgatcggccgcgccgcgcgcaacgtcgacggccgcgtc
atcctctatgccgaccgcatcaccggcagcatggagcgcgcgatgaacgagacgtcgcgc
cgccgcgagaagcaggaagcgtacaaccgcgaacacggcatcacgcccgcgacggtgcgc
aagaacatcggcgacatcatcgcgcacgtcgccagccaagaccaggtgacggtgccgatc
gatgaggacggccagcggccgcacatggtcggccacaatctgcgcgcctacatcgaggag
ttggaaaagaagatgcgcaaggccgcctccgacctcgaattcgaagaagccggccgcctc
cgcgacgaaatccgcagcctcgaacaggaagaactcggcctccccgtcgaacagcacaag
gcgccgatcatgggccgcagcaacgaaggcaagccgggcacacgcaagacgcgttacggc
aagcagcagaagatgcgcatggggggctcacggagccgttag

DBGET integrated database retrieval system