Sphingomonas sp. FARSPH: DM480_11945
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Entry
DM480_11945 CDS
T05685
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM480_11945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphf03019
]
DM480_11945
03009 Ribosome biogenesis [BR:
sphf03009
]
DM480_11945
Enzymes [BR:
sphf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DM480_11945
Messenger RNA biogenesis [BR:
sphf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DM480_11945
Ribosome biogenesis [BR:
sphf03009
]
Prokaryotic type
rRNA helicases
DM480_11945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXJ96110
UniProt:
A0A345WR08
LinkDB
All DBs
Position
complement(2489268..2491004)
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AA seq
578 aa
AA seq
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MPFSSLPPVLAEALVARGYEAPTAVQAAVIEPEAVGRDLIVSAQTGSGKTVAFGLAMAGE
LIVDDALAPPAAPLALVIAPTRELALQVSRELQWLYAGAHARIATCVGGMDPSKERRNLN
HGAHIVVGTPGRLRDHLERGALDLSALRVAVLDEADEMLDMGFREDLEQILDGTPEGRRT
LLFSATMPKPIVALARRYQQNALRIETMSEERGHGDIAYQAITVAPADIEHAVINLLRFH
EAETAILFCATRDNVRHLHASLVERGFAAVALSGEHSQSERNHALQALRDRRARVCVATD
VAARGIDLPSLTLVVHVELPRDAETLQHRSGRTGRAGKKGTAVLIVPYPRRRRVDMMLRQ
ARIPVEWIAAPSAEDIRAADRERLLATLFAPVEVDDEDRALAERLMAEKSAEDIAAALVH
MHRAALPQAEELLDAGAAPQTPRERGPRPGFEDTVWFRMDIGRRQNADPRWILPLICRRG
HVTKSEIGAIRINPNDTMFELPRGVADRFLSSVRRTANPDNDEGSLTIEPFNGTPREATQ
RSGGGQRGGDNAARAPRAGNMGGAPRHQAKPFRPKRKG
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttcctcccttcccccggtgctcgccgaggcgctcgtcgcgcgcggctatgaa
gcccccactgccgtccaggccgccgtcatcgaacccgaagcggtcggccgcgacctgatc
gtgtccgcccagaccgggtcgggcaagaccgtcgcctttggccttgccatggcgggcgag
ctcatcgtcgatgacgcgctcgcgccccccgccgcgccgctcgcgctggtcatcgcgccg
acgcgcgagctggcgctgcaggtcagccgcgagttgcaatggctgtacgccggcgcgcat
gcgcgcatcgcgacctgcgtcggcgggatggatccgtcgaaggaacgccgcaacctgaac
catggcgcgcatatcgtcgtcggcacgcccggccgcctgcgcgatcacctcgagcggggc
gcgctcgacctgtcggcgctgcgcgtcgccgtgctcgacgaggcggacgagatgctcgac
atggggtttcgcgaggacctggagcagattctcgacggcacgcccgaagggcgccgcacc
ctgttgttctccgcgacgatgcccaagccgatcgtcgcgctggcgcgtcggtatcagcag
aacgcgctgcgaatcgagacgatgtccgaagagcgcggccacggcgacatcgcctatcag
gcgatcaccgtcgcgcccgcggacatcgagcatgcggtcatcaacctgctccgcttccac
gaggcggaaaccgcgatcctgttctgcgcgacgcgcgataacgtccgtcacctgcacgcc
agcctggtcgagcgcggtttcgccgccgtcgcgctatctggcgagcattcgcaatcggag
cgcaatcacgcgctccaggcgctgcgggaccggcgtgcgcgcgtctgcgtcgcgaccgac
gtcgccgcgcgcggcatcgatctgcccagcctgaccttggtcgtccacgtcgagctgccg
cgcgacgccgagacgctgcagcaccgctctggccgtaccggccgcgccggcaagaagggc
acggcggtccttatcgtcccctacccgcgccgtcgacgtgtcgacatgatgctgcgccag
gcgcgcatcccggtggaatggatcgcggcgccgagtgcggaggatatccgcgcagccgac
cgagagcgcttgctcgccacgctgttcgcgccggtggaggtggatgacgaggatcgtgca
ctcgccgagcgattgatggcggaaaagtcggcggaggatatcgcggcggcactggttcac
atgcaccgtgccgcgctgccgcaggcggaggagctgctcgacgcgggcgccgcgccgcag
accccgcgcgagcgggggccgcgccccgggttcgaggataccgtctggttccgcatggac
atcggccgccgccagaacgccgatccgcgctggatcctgccgctgatctgccgccgcggg
cacgtgaccaagtcggaaatcggcgcgatccgcatcaatccgaacgacacgatgttcgaa
ttgccgcgcggggtcgccgatcgcttcctgtccagcgtccgccgcaccgccaacccggac
aatgacgagggcagcctgacgatcgagcctttcaacggcaccccgcgcgaggcgacacag
cgcagcggcggtggccagcgcggcggcgacaatgccgcgcgcgcgccgcgcgccggcaac
atgggcggcgccccgcgccatcaggcgaagccgttccgcccgaagcgcaagggctga
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