Sphingomonas sp. FARSPH: DM480_14645
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Entry
DM480_14645 CDS
T05685
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sphf
Sphingomonas sp. FARSPH
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphf03016
]
DM480_14645 (rnd)
Enzymes [BR:
sphf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
DM480_14645 (rnd)
Transfer RNA biogenesis [BR:
sphf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DM480_14645 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AXJ96545
UniProt:
A0A345WS93
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All DBs
Position
3097058..3098236
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AA seq
392 aa
AA seq
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MHIHPLITDSATLANLCTRLADADFVTVDTEFMRESTYYPELCLIQIADVNEAAAIDPMA
PGLDLTPLLTLLTDNDDVLKVVHAGGQDIEIIYNLTGKTPHPLFDTQVAAMALGQGEQIG
YSNLVDSWLGISIDKGARFTDWARRPLDARQIEYAIGDVTHLAKIFPKMLERLRKTGRGA
WLDQEMERLADPANYANDPDSAWKRVRISGRKPDVLGRLKALARWRELEAQAKDLPRGRI
VKDETLGDIAGHPPRRQADLAKVRGLSATWASNDIGGRLMAALEAATPLSADELPPRDDR
KPGLGKDGALVADLLKLLLKIRARDIDVASRLLARSDELEMLAAGVRTGLPMLQGWRYDQ
FGRDALDLVEGRMAFAVKNGKLTMTRADEVAA
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgcatatccacccgttgattaccgacagcgcgaccctcgccaatctctgcacccgcctc
gccgatgccgacttcgtcaccgtcgacaccgagttcatgcgcgagagcacctattacccc
gaattatgcctgatccagatcgccgacgtgaacgaggcggcggcgatcgatccgatggcg
ccggggctggatctgacgccgctgctcaccctgctcaccgacaatgacgacgtgctcaag
gtcgtccacgcgggcgggcaggatatcgagatcatctacaacctgaccggcaagacgccg
cacccgctgttcgacacgcaggtcgcggcgatggcgctggggcaaggcgaacagatcggc
tattcgaacctcgtcgacagctggctgggcatcagcatcgacaagggcgcgcgcttcacc
gactgggcgcgccggccgctggatgcgcggcagatcgaatatgcgatcggcgacgtcacg
catctggcgaagatattccccaagatgctggagcggctgcgcaagacggggcgcggcgcg
tggctggaccaggagatggagcggctggccgatccggcgaattacgccaacgatcccgac
agcgcgtggaagcgcgtgcggatttcggggcgcaagcccgacgtgctcggccgactgaag
gcgctggcgcgctggcgcgagctggaggcgcaggcgaaggacctgccccgcggccggatc
gtcaaggacgagaccttgggcgatatcgcgggccatccgccccggcggcaggcggacctg
gccaaggtgcgcggtctgtcggcgacctgggcgtcgaacgatatcggcgggcggctgatg
gcggcgctggaggcggcgacgccgctgtcggcggacgagctgccgccgcgcgacgatcgc
aagccgggcctgggcaaggacggcgcgctggtcgcggatctgctcaagctgttgctcaag
atacgcgcgcgcgacatcgacgtcgcctcgcgcctgctcgcgcggtcggacgagctggag
atgctggcggcgggggtgcgcaccggcctgccgatgctgcagggctggcgttacgaccag
ttcggccgcgatgcgctcgacctggtcgaggggcggatggcgtttgcggtcaagaacggc
aagctgacgatgacacgcgcggatgaggtggcggcatga
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