Sphingomonas sp. FARSPH: DM480_15075
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Entry
DM480_15075 CDS
T05685
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03030
DNA replication
sphf03430
Mismatch repair
sphf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM480_15075
03430 Mismatch repair
DM480_15075
03440 Homologous recombination
DM480_15075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphf03032
]
DM480_15075
03400 DNA repair and recombination proteins [BR:
sphf03400
]
DM480_15075
Enzymes [BR:
sphf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DM480_15075
DNA replication proteins [BR:
sphf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DM480_15075
DNA repair and recombination proteins [BR:
sphf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DM480_15075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
AXJ97155
UniProt:
A0A345WU03
LinkDB
All DBs
Position
complement(3184228..3187782)
Genome browser
AA seq
1184 aa
AA seq
DB search
MHSGFVPLRIFSSYTMLDGAIEPKAIAKQAKALQFPAAGLTDRNGLYAAMAFSDAAKKDG
VQPLIGTMLCVARPDMPDGVAAPLDWLALYAQDMTGYDNLCALVSLAHLERPLELAAHID
FAMLEGRTDGLIALTAGGEGTLARLFAEDQPARAQAYCDRLQALFGDRLFIEVARRGDPV
EEASEQALIDLAYARDLPLVATNPCCFAESAFRDAHDAMLCIAHSTYVESDDRPKSSPDA
WLKPADAMKALFADLPEAIDNTLVVAQRCAVMAPKRKPILPSLAGDRAGEAMMLRRDAHA
GLEARLRRIVEVERGIAVAEAPADAPTQRLDDVTPEYLRARFPDYFERLDFEIDVIVQMG
FPGYFLIVADFIKWAKDHDIPVGPGRGSGAGSAVAWALTITDLDPIKLGLLFERFLNPER
VSMPDFDIDFCETRRGEVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQV
DRLAKLVPNHPTDPWDLKRALNGVPELAKEYANDNQVRRLLDLATKLEGLPRHSSTHAAG
VVIGDRPLAQLVPLYRDPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLKKAVQLLAK
RGISVDLDALQWDDEGVYKLLQKGDTVGVFQLESEGMRRTLSAVRPTNFGDIVALVSLYR
PGPMDNIPSFGRRKQGTEALTYPHPLLEPILKETYGIFVYQEQVMQAAQVLAGYSLGGAD
LLRRAMGKKIKAEMDAQRATFVEGCATHNGIGKDYANQLFDLIDKFAGYGFNKSHAAAYA
LLAYQTAWLKAHHPHEFFAASMCYDMALTDKLSIFVDDMRRLGVGIAGPDINASEAEFDV
QETPDGLVVRYALGALKSVGEGAMEKLVMERQAAGPFKSLDDLANRVDPRLINKRQLETL
AAAGAFDAIEPNRAAVHAVAETILGLAAHTHAGRTSGQGGLFGTDDAAGDTIKLNRSLRW
NMAETMEQEKEAFGFYFSAHPVDRHAHLARMHGARQYVSLTELRIPEDGTRAGATMAVLV
EEARWRTSARGKRYMMATLSDASGQFIATCFDDAVAADLEEAAREGGCGLITVELDRRPG
EETPRVSVKRIQPFESLATHARFTIEAKVADRAALAALADLLGAARGARGEVRVRMPIDG
GEAKLLLGRDFLLDLELVAAIEAIPGITEVALDRAASSQLQLVG
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgcattccgggttcgtgccgcttcgtatcttttcctcctacacgatgctggatggcgcg
atcgaacccaaggcgatcgcgaagcaggcgaaagcgctccaatttcctgccgctggcctc
accgaccgcaatggcctctacgcggcgatggccttttccgacgccgcgaagaaggatggc
gtgcagccgctgatcggcacgatgttgtgcgtcgcgcgacccgacatgccggacggcgtc
gccgcgccgctcgactggctggcgctgtatgcgcaggatatgacggggtacgacaatctg
tgcgcgctcgtcagcctcgcgcatctcgaacgcccgctcgaacttgccgcacacatcgac
ttcgcgatgctggaggggcgtaccgatgggctcatcgcgctgaccgcgggcggcgagggg
acgctcgcgcgtctgttcgcggaagatcaaccggcacgcgcacaggcctattgcgaccgg
cttcaggccttgttcggcgaccgtctgttcatcgaggtcgcacggcgcggcgatccggtg
gaggaagcgtcggaacaggcgctgatcgatcttgcctatgcgcgcgacctgccgctggtg
gcgaccaatccgtgctgtttcgccgaaagcgcgtttcgcgatgcgcatgacgcgatgctg
tgcatcgcccattcgacgtatgtcgaaagcgacgatcggcccaaatcctcgccggacgcg
tggctgaagcctgccgatgcgatgaaggcgctgttcgccgatctgcccgaggcgatcgac
aacacgctcgtcgtcgcacagcgctgcgcggtaatggcgcccaagcgcaagccgatcctg
cccagtctcgcgggcgaccgcgcgggcgaggcgatgatgctgcgccgcgacgcgcacgcg
gggctggaggcgcggctgcggcgcatcgtcgaggtggagcgcggcatcgcggtggcggaa
gcgcccgccgatgcaccgacgcagaggctggacgacgtcacgcccgaatacctccgcgcc
cgtttcccggactatttcgaacgcctcgacttcgagatcgacgtcatcgtccagatgggt
ttccccggatatttcctgatcgtcgcggacttcatcaaatgggcgaaggatcacgacatc
cccgtggggcctggccgtggttcaggcgcgggcagcgcggtcgcgtgggcgctgaccatc
actgatctcgatccgatcaagctcggcctgctgttcgaacgctttctcaatccggaacgc
gtgtcgatgcccgacttcgacatcgatttctgcgaaacgcggcgcggcgaggtgatccgc
tacgtacaggagaaatacggacgcgatcaggtcgcgcagatcatcaccttcggtaagctg
aaggcgcgcgccgtgctcaaggacactggccgcgtcctccagatgagctatggccaggtc
gaccgcctcgccaagcttgtccccaatcatcctaccgacccatgggacctgaagcgcgcg
ctgaacggcgtgcccgaattggcgaaggaatatgccaacgacaatcaggtccgccgcctg
ctcgacctcgccaccaagctggaaggcctgccgcgtcactcctcgacgcacgccgcgggt
gtggtaatcggcgaccgcccgctcgcgcagctcgtcccgctctatcgcgacccgcgttcc
gacatgccggtgacgcagttcgacatgaaatatgtcgaaggcgccgggctggtgaaattc
gacttccttggcctcaagacgctatcggttctgaagaaggccgtccaactgcttgcgaag
cggggcatttcagtcgacctcgacgcgctgcaatgggatgacgagggcgtctacaagctg
ctgcagaaaggcgacacggtcggcgtcttccagctcgaatcggaggggatgcgacgtacg
ctcagcgccgtccgcccgaccaatttcggcgacatcgtcgcgctcgtctcgctctaccgt
cccggtccgatggacaatatcccgagcttcggccgccgcaagcaggggacggaggcgctg
acctatccccacccgttgctcgagccgatcctgaaggagacctacgggattttcgtctat
caggaacaggtgatgcaggcggcgcaggtgcttgccggctattcgctcggcggcgccgac
ctgctgcgtcgcgcgatgggcaagaagatcaaggcggaaatggacgcgcagcgcgcgacc
ttcgtcgagggctgcgccacgcacaacggcatcggcaaggattatgcgaaccagctgttc
gacttgatcgacaagttcgccggctacggcttcaacaagagccacgccgccgcctacgcg
ctgctggcctatcaaacggcgtggctgaaggcgcaccatccgcacgaattctttgctgcg
tccatgtgttacgacatggccctgacggacaagctcagcatcttcgtcgatgacatgcgg
cggttgggcgtcggcatcgccgggcccgacatcaacgccagcgaggcggagttcgacgtg
caggagacgccggacggcctcgtcgtccgctacgcgctcggggcgctcaagtcggtgggc
gagggggcgatggaaaagctcgtcatggagcgccaagcggcggggccgttcaagagcctc
gacgatctcgccaatcgcgtcgacccgcggctgatcaacaagcgccagctcgaaacgctc
gctgccgcgggcgccttcgacgccatcgagccgaaccgcgccgcggttcatgcggtggcg
gaaacgatcctcggccttgccgcgcacacgcatgccgggcggacgagcgggcagggtggc
ctgttcgggaccgacgacgccgccggcgacacgataaagctcaaccgctcgctacgctgg
aacatggcggagacgatggagcaggagaaagaggcgttcggcttctatttttccgcccac
cccgtcgatcgccacgcgcatctcgcgcgcatgcacggtgcgcggcaatatgtctcgctc
accgaattgcgcattccagaggatggcacgcgcgccggcgcgacgatggcggtgctggtc
gaggaggcgcgctggcgcacctcggcgcggggcaagcgctatatgatggcgacgctgtcc
gacgcgagcggccagttcatcgcgacctgtttcgacgatgccgtcgccgccgacctggaa
gaggcggcgcgcgagggcggctgcggcctcatcaccgtggagctcgaccgtcgtcccggc
gaggagacgccgcgcgtctcggtcaagcggatccagccgttcgagagcctcgcgacgcac
gcgcggttcacgatcgaggcgaaggtcgccgatcgcgccgcactggccgcactcgccgac
ctgctcggcgcggcgcggggcgcacggggggaggtgcgcgtgcgcatgccgatcgacggc
ggcgaggcgaagctgctgctgggccgcgatttcctgctcgacctcgagctcgtcgccgcg
atcgaggcaatacccggcattaccgaagttgcgctcgatcgcgctgcttcctcgcaactg
caactggtcggctga
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integrated database retrieval system
