Sphingomonas sp. FARSPH: DM480_15380
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Entry
DM480_15380 CDS
T05685
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03420
Nucleotide excision repair
sphf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DM480_15380
03430 Mismatch repair
DM480_15380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphf03400
]
DM480_15380
Enzymes [BR:
sphf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DM480_15380
DNA repair and recombination proteins [BR:
sphf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DM480_15380
MMR (mismatch excision repair)
Other MMR factors
DM480_15380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
AAA_11
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
AXJ96662
UniProt:
A0A345WSL0
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All DBs
Position
3245023..3247302
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AA seq
759 aa
AA seq
DB search
MTDTADALQDPPYLKGLNPPQREAVLTTEGPVLMLAGAGTGKTAALTARLAHLLWTRKAW
PSEILAVTFTNKAAREMRERVGRLVGEAVEGMPWLGTFHAIGAKMLRRHAELVGLQSNFT
ILDTDDQLRLLKQLIVAADLDEKRFPARSLAGLIDDWKNKGLVPADIDAGESERYANGRG
GELYAQYQERLKALNACDFGDLLLHMLTILKTHADVLRLYQERFRYIMVDEYQDTNVVQY
LWLRLLAQARKNIACVGDDDQSIYSWRGAQVENILRFERDFPGAAVIKLEQNYRSTPHIL
GAASGVIAHNGGRLGKTLWTELDVGEKVRVVGVWDGPEEARRVGDEIEAARRSGTSLDRI
AILVRAQHQTREFEDRFIAIGLPYRIVGGYRFYERAEIRDALAYLRIVNQPADDLAFERI
VNVPKRGLGDKALAKIHQLARIEGLPLTIASARILDTDELTPQARRALGNLVGDIARWRD
MARELPHAELARQLLDESGYTAMWQAEKSVEAAGRLENLSELVRAMEDYETLGAFLEHVS
LVMDNEGGAQDPQVTIMTIHAAKGLEFDTVFLPGWEEGLFPSQRSLDEGGTKSLEEERRL
AYVAITRARRLAVILHAANRRIYGQWTSSIPSRFVGELPPEHVDSETTMAGGESLWRANW
SERADPFADVARGTGRGPGWQRAAGAGSSFTTQPTRIVESRASAVSLGSKGRSDLSPGLR
VFHQKFGYGAIAEIEGNKLEIDFESAGRKRVLDSFVTVA
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaccgccgacgccttgcaggacccgccctatctcaagggcctcaatccgccc
cagcgtgaggcggtgctgaccacggaaggcccggtgctgatgctcgccggcgccggcacg
ggcaagaccgccgcgctgacggcgcggcttgcgcatttgttgtggacgcgcaaggcatgg
ccgtccgaaatccttgcggtcaccttcaccaacaaggcggcgcgcgagatgcgcgaacgc
gtcggccggctggtcggcgaggcggtggagggcatgccgtggctcggcaccttccacgcg
atcggcgcgaagatgctgcgccgccacgccgaactcgtcgggctgcagagcaatttcacc
atcctcgacaccgacgaccaattgcggctgctgaagcagttgatcgtcgccgccgacctc
gacgagaagcgttttcccgcgcgcagtctcgccgggctgatcgacgactggaagaacaag
ggcctcgtgcccgccgacatcgacgcgggcgagagcgaacgctacgccaacggtcgcggc
ggcgagctgtatgcacaatatcaggagcggctgaaggcgctcaacgcctgcgatttcggc
gacctgttgcttcatatgctcaccatcctgaagacgcatgccgacgtgctgcgcctgtac
caggagcggttccgctacatcatggtcgacgaatatcaggacaccaatgtcgtccagtat
ctctggctgcggctgctcgcgcaggcgcgcaagaacatcgcctgcgtcggcgacgacgac
cagtcgatctattcctggcgcggcgcacaggtggagaacatcctgcgcttcgagcgcgac
tttccgggcgcggcggtgatcaagctggagcagaattaccgctccaccccgcatatcctc
ggtgccgcatccggcgtcatcgcacacaatggcggacggctgggcaagacgctgtggacc
gaactcgacgtcggcgagaaggtccgtgtcgtcggcgtctgggatggccccgaggaagcg
cgacgcgtcggcgacgagatcgaggcggcgcggcgcagtggcaccagcctcgaccggatc
gcgatcctcgtccgcgcgcagcaccagacgcgcgagttcgaggaccggttcatcgcgatc
ggcctgccctatcgcatcgtcggcggttatcgcttctacgagcgcgccgaaatccgcgac
gcgctcgcctacctccgcatcgtcaatcagccggcggacgatttggcgttcgaacgcatc
gtcaacgtgcccaagcgtgggctgggcgataaggcgctggcgaagatccaccagctcgcc
cggatcgagggcctgccgctgacgatcgcgtcggcgcgcatcctcgacaccgacgaactg
accccgcaggcgcgccgcgcgctcggcaacctcgtcggcgacatcgcgcgctggcgcgat
atggcgcgcgagctgccgcatgccgaactcgcgcgccaattgctcgacgagagcggctat
acggcgatgtggcaggcggaaaagtcggtcgaggcggcggggcggctggagaatctgtcc
gaactcgtccgcgcgatggaggattacgagacgctcggcgcgttcctcgaacacgtcagc
ctcgtcatggacaatgaaggcggtgcgcaggacccgcaggtgacgatcatgacgatccac
gccgccaagggtctggaattcgacacggtcttcctgcccggctgggaggaagggctgttt
ccctcgcaacgctcgctcgacgagggcggcaccaagagcctggaggaggagcgccggctc
gcctatgtcgcgatcacccgcgcacggcggctggcggtgatcctgcatgccgcgaaccgg
cgcatctatggccagtggacgtcgagcatccccagccgcttcgtcggcgaactgccgccg
gagcatgtcgacagcgagacgacgatggcgggcggcgagagcctgtggcgcgccaattgg
tccgaacgtgccgacccgttcgccgacgtcgcgcgcggcaccggccgcggcccgggctgg
cagcgtgccgccggtgcaggatcgagcttcacgacgcaaccgacgcgcatcgtcgaaagc
cgcgccagcgcggtcagcctgggcagcaaggggcgcagcgacctgtcgcccggcctgcgc
gtcttccatcagaagttcggatatggcgcgatcgccgaaatcgagggcaacaagctcgag
atcgatttcgagagcgcaggccgcaagcgcgtcctcgacagtttcgtcaccgtcgcctga
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